View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_13 (Length: 551)
Name: NF13777_low_13
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 7e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 33271978 - 33272161
Alignment:
| Q |
1 |
ctaaaccaaatactatatgnnnnnnncttgctacatataagcatatccataacaacatatcaaatcatcgaagttttggctcttnnnnnnntcataaaag |
100 |
Q |
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| T |
33271978 |
ctaaaccaaatactatatgaaaaaaacttgctacatataagcatatccaaaacaacatatcaaatcatcgaagttttggctcttaaaaaaatcataaaag |
33272077 |
T |
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| Q |
101 |
tttgaatcaagtagatgatagggagattaattgattgacgaactaatttcagatgttagttcgtgacaaaaatggaaaaatgga |
184 |
Q |
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| T |
33272078 |
tttgaatcaagtagatgatagggagattaattgattgacgaactaatttcagatgttagttcgtgacaaaaatggaaaaatgga |
33272161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 221 - 415
Target Start/End: Original strand, 33272149 - 33272339
Alignment:
| Q |
221 |
atggaaaaatggaacataagttatgtagatctttgacgtaaacacannnnnnnncattctgaatacaatttatatttccaatcttgtatatttattttct |
320 |
Q |
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| T |
33272149 |
atggaaaaatggaacacaagttatgtagatctttgatgtaaacacattttttt-cattctgaatacaatttatatttccaatcttgtatatt----ttct |
33272243 |
T |
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| Q |
321 |
cggcaacattcaaggcaatgtacgttgcaccaccaacatacacacacattgttcttcaagaattaacgacaacatgatg-aagatcataggacaat |
415 |
Q |
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| T |
33272244 |
cggcaacattcaaggcaatgtacgttgcaccaccaacatacacacacattgttcttcaagaattaacgacaacatgacgaaaaatcataggacaat |
33272339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 413 - 521
Target Start/End: Original strand, 33272466 - 33272574
Alignment:
| Q |
413 |
aattggcaaataaaaatcaatattaataatggtgatatcaatgatcattttacaaccgtctcacatgagaattgaactcatctattgaggttacaaagtt |
512 |
Q |
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| T |
33272466 |
aattggcaaataaaaatcaatattaataatggtgatatcaatgatcattttacaaccgtctcacatgaaaattgaactcatctattgaggttacaaagtt |
33272565 |
T |
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| Q |
513 |
aaattttta |
521 |
Q |
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| T |
33272566 |
aaattttta |
33272574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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