View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_14 (Length: 546)

Name: NF13777_low_14
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_14
NF13777_low_14
[»] chr3 (9 HSPs)
chr3 (18-296)||(11614969-11615247)
chr3 (294-531)||(11614677-11614914)
chr3 (31-248)||(13752267-13752484)
chr3 (31-248)||(13765670-13765887)
chr3 (30-252)||(11606079-11606302)
chr3 (30-252)||(13738832-13739048)
chr3 (421-531)||(13765284-13765398)
chr3 (421-524)||(13751888-13751995)
chr3 (421-474)||(13738513-13738566)
[»] chr6 (2 HSPs)
chr6 (30-244)||(35079799-35080010)
chr6 (436-531)||(35080260-35080355)
[»] chr8 (4 HSPs)
chr8 (414-468)||(15607184-15607238)
chr8 (414-468)||(15626105-15626159)
chr8 (414-468)||(15638704-15638758)
chr8 (414-468)||(15649865-15649919)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 11615247 - 11614969
Alignment:
Q  18 actatcgtccttatcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatccagagtaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615247 actatcgtccttatcattattaaaaattggctttcatctttcttatatttttctccccatgcttgtattttaaggttcttggcgtatcatccagagtaca 11615148  T
Q  118 agaaaaatggtgtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaaatctgttga 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11615147 agaaaaatggtgtaactcctgcacggttctcatttgaagtgcctacgccattgcaagaaaactacatgaggaagaagcgctctcatgctaaatctgttga 11615048  T
Q  218 acctaagcaaggtacataaaattttaattaaatcaaccttacacgttatatgattttagtttgatgcaccaatgtattt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615047 acctaagcaaggtacataaaattttaattaaatcaaccttacacgttatatgattttagtttgatgcaccaatgtattt 11614969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 294 - 531
Target Start/End: Complemental strand, 11614914 - 11614677
Alignment:
Q  294 tttttcacccttacacgttcccacttctattttttcggtacatccatttttgttattgttattagccgtatattttgtccggtggagaagtatgattttt 393  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11614914 tttttcacccttacacgtttccacttctattttttcggtacatccatttttgttattgttattagccgtatattttgtccggtggagaagtatgattttt 11614815  T
Q  394 acattgctaagctaatgacttgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatcttatttttgaatgaaat 493  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  11614814 acactgctaagctaatgacttgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatctatcatcttatttttgaatgaaat 11614715  T
Q  494 gttgacaccaagaatttttgtgaattgtgatatctgtg 531  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11614714 gttgacaccaagaatttttgtgaattgtgatatctgtg 11614677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 31 - 248
Target Start/End: Complemental strand, 13752484 - 13752267
Alignment:
Q  31 tcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatccagagtacaagaaaaatggtgt 130  Q
    |||||||||||  ||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||| | ||||| ||||||||| || | |||||||    
T  13752484 tcattattaaattttggctttcatctttcttacattttgctcccggtgcttgtgttttaaggttcttggtgaatcattcagagtacacgacagatggtgt 13752385  T
Q  131 aactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaaatctgttgaacctaagcaaggt 230  Q
     ||| ||||||||||||| ||| || |||||| | | |||||||| |||||   || |||||||||||||||||||||||||||||||||||| ||||||    
T  13752384 tacttctgcacggttctcatttcaaatgcctaagcccttgcaagagaactatgtgaagaagaagcgctctcatgctaaatctgttgaacctaatcaaggt 13752285  T
Q  231 acataaaattttaattaa 248  Q
    || |||||||||||||||    
T  13752284 acgtaaaattttaattaa 13752267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 31 - 248
Target Start/End: Complemental strand, 13765887 - 13765670
Alignment:
Q  31 tcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatccagagtacaagaaaaatggtgt 130  Q
    |||||||||||  ||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||| | ||||| ||||||||| || | |||||||    
T  13765887 tcattattaaattttggctttcatctttcttacattttgctcccggtgcttgtgttttaaggttcttggtgaatcattcagagtacacgacagatggtgt 13765788  T
Q  131 aactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaaatctgttgaacctaagcaaggt 230  Q
     ||| ||||||||||||| ||| ||  ||||| | | |||||||| |||||   || |||||||||||||||||||||||||||||||||||| ||||||    
T  13765787 tacttctgcacggttctcatttcaaaagcctaagcccttgcaagagaactatgtgaagaagaagcgctctcatgctaaatctgttgaacctaaccaaggt 13765688  T
Q  231 acataaaattttaattaa 248  Q
    || |||||||||||||||    
T  13765687 acgtaaaattttaattaa 13765670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 11606079 - 11606302
Alignment:
Q  30 atcattattaaaaattggctttca-tctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatccagagtacaagaaaaatggt 128  Q
    ||||||||||||||| | |||||| ||||||||| |||| | ||||  ||||||| ||| ||||||||| ||  ||||||||||||||  || |||||||    
T  11606079 atcattattaaaaatcgcctttcaatctttcttacatttcgttcccggtgcttgtgtttgaaggttctttgccgatcatccagagtacgtgacaaatggt 11606178  T
Q  129 gtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaaatctgttgaacctaagcaag 228  Q
    |||||| ||||||||||||| ||| || |||||| | | |||||||| ||||||  || ||||||||| |||||||||||||||||||||||||||||||    
T  11606179 gtaacttctgcacggttctcatttcaaatgcctaagcccttgcaagagaactacgtgaagaagaagcgttctcatgctaaatctgttgaacctaagcaag 11606278  T
Q  229 gtacataaaattttaattaaatca 252  Q
    ||||||||| |||||| |||||||    
T  11606279 gtacataaatttttaactaaatca 11606302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 13739048 - 13738832
Alignment:
Q  30 atcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatccagagtacaagaaaaatggtg 129  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||  ||||||||||||| | || | ||||||    
T  13739048 atcattattaaaatttggctttcatctttcttacattttgctcccggtgcttgtgttttaaggttcttggcagatcatccagagtatatgacagatggtg 13738949  T
Q  130 taactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaaatctgttgaacctaagcaagg 229  Q
    |||||| | | |||||||| ||| ||   |||| |||   |||||||| |||   |||   ||||||||||||||||||||| ||||||| |||||||||    
T  13738948 taactctttcgcggttctcatttaaaagacctaagtc---gcaagaaagctatgtgag---gaagcgctctcatgctaaatcggttgaacataagcaagg 13738855  T
Q  230 tacataaaattttaattaaatca 252  Q
    |||||  |||||||| |||||||    
T  13738854 tacattcaattttaactaaatca 13738832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 531
Target Start/End: Complemental strand, 13765398 - 13765284
Alignment:
Q  421 gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatc----ttatttttgaatgaaatgttgacaccaagaatttttgtga 516  Q
    ||||||||||| | ||||| |||||||||||||||| |||||||||||| |||| |    |||| | |||||||||||||| | |  ||||||||||||     
T  13765398 gatgaaactctcatctggtatatagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgagaatttttgtgc 13765299  T
Q  517 attgtgatatctgtg 531  Q
    || ||||||| ||||    
T  13765298 atggtgatatgtgtg 13765284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 524
Target Start/End: Complemental strand, 13751995 - 13751888
Alignment:
Q  421 gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatc----ttatttttgaatgaaatgttgacaccaagaatttttgtga 516  Q
    ||||||||||| | ||||| |||||||||||||||| |||||||||||| |||| |    |||| | |||||||||||||| | |  ||||||||||||     
T  13751995 gatgaaactctcatctggtatatagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgagaatttttgtgc 13751896  T
Q  517 attgtgat 524  Q
    || |||||    
T  13751895 atggtgat 13751888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 13738566 - 13738513
Alignment:
Q  421 gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagca 474  Q
    ||||||||||| | ||||| |||||||||||||||||||||||| |||| ||||    
T  13738566 gatgaaactctcatctggtatatagtgtatcaaaaagtaaatgtcaatctagca 13738513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 35079799 - 35080010
Alignment:
Q  30 atcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatccagagtacaagaaaaatggtg 129  Q
    |||||||||||  || | ||||||||||||||| ||||||||||   ||||||| ||||||| ||||||||| | ||||| ||||||| || |  |||||    
T  35079799 atcattattaatcatcgtctttcatctttcttacattttgctcctggtgcttgtgttttaagattcttggcggaacatcctgagtacatgacagctggtg 35079898  T
Q  130 taactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaaatctgttgaacctaagcaagg 229  Q
    ||||||||||||||||||| ||  || | |||| | ||||||||||||||||   |||   |||||||||||||||||||||| |||||||| |||||||    
T  35079899 taactcctgcacggttctcattccaaattcctaagccattgcaagaaaactatgtgag---gaagcgctctcatgctaaatctattgaacctgagcaagg 35079995  T
Q  230 tacataaaattttaa 244  Q
    ||||||| |||||||    
T  35079996 tacataacattttaa 35080010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 436 - 531
Target Start/End: Original strand, 35080260 - 35080355
Alignment:
Q  436 tggtgtatagtgtatcaaaaagtaaatgttaatcaagcatcttatttttgaatgaaatgttgacaccaagaatttttgtgaattgtgatatctgtg 531  Q
    |||||||||| |||||||| |||||||||||||| |||| | | ||||||||||||||||||  ||  || ||||||||| || ||||||||||||    
T  35080260 tggtgtatagcgtatcaaacagtaaatgttaatctagcaccctctttttgaatgaaatgttggtactgaggatttttgtggatggtgatatctgtg 35080355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 15607184 - 15607238
Alignment:
Q  414 tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat 468  Q
    |||||||||||||||||| | ||  | ||||||||||||||||||||||||||||    
T  15607184 tgaaagagatgaaactcttatctactatatagtgtatcaaaaagtaaatgttaat 15607238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 15626105 - 15626159
Alignment:
Q  414 tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat 468  Q
    |||||||||||||||||| | ||  | |||||||||||||||| |||||||||||    
T  15626105 tgaaagagatgaaactcttatctactatatagtgtatcaaaaattaaatgttaat 15626159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 15638704 - 15638758
Alignment:
Q  414 tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat 468  Q
    |||||||||||||||||| | ||  | ||||| ||||||||||||||||||||||    
T  15638704 tgaaagagatgaaactcttatctactatatagagtatcaaaaagtaaatgttaat 15638758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 15649865 - 15649919
Alignment:
Q  414 tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat 468  Q
    |||||||||||||||||| | ||  | |||||||||||||| |||||||||||||    
T  15649865 tgaaagagatgaaactcttatctactatatagtgtatcaaacagtaaatgttaat 15649919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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