View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_16 (Length: 528)

Name: NF13777_low_16
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_16
NF13777_low_16
[»] chr1 (8 HSPs)
chr1 (18-445)||(31320521-31320949)
chr1 (265-400)||(25965410-25965545)
chr1 (264-408)||(26101993-26102137)
chr1 (264-406)||(27461216-27461358)
chr1 (289-381)||(15417033-15417125)
chr1 (271-401)||(18795124-18795254)
chr1 (329-381)||(13807852-13807904)
chr1 (269-389)||(34381663-34381783)
[»] chr8 (5 HSPs)
chr8 (264-408)||(10866924-10867068)
chr8 (289-408)||(13530165-13530284)
chr8 (289-408)||(13619704-13619823)
chr8 (335-407)||(12774949-12775021)
chr8 (331-379)||(41505639-41505687)
[»] chr5 (5 HSPs)
chr5 (289-405)||(24846200-24846316)
chr5 (47-120)||(17459841-17459914)
chr5 (331-408)||(26070411-26070487)
chr5 (296-408)||(24130591-24130703)
chr5 (264-304)||(24410964-24411004)
[»] chr4 (6 HSPs)
chr4 (264-408)||(10576389-10576533)
chr4 (331-408)||(17339915-17339992)
chr4 (333-403)||(16442363-16442432)
chr4 (264-381)||(24925768-24925885)
chr4 (289-389)||(31859940-31860040)
chr4 (271-380)||(21167693-21167802)
[»] chr2 (7 HSPs)
chr2 (264-394)||(24047332-24047462)
chr2 (269-353)||(18116974-18117058)
chr2 (290-388)||(32276574-32276672)
chr2 (264-405)||(39730386-39730527)
chr2 (274-353)||(15454575-15454654)
chr2 (340-405)||(21505250-21505315)
chr2 (289-381)||(31449920-31450012)
[»] chr3 (2 HSPs)
chr3 (264-400)||(21829167-21829303)
chr3 (340-413)||(25919575-25919648)
[»] chr6 (5 HSPs)
chr6 (266-401)||(12972421-12972556)
chr6 (264-377)||(9943184-9943297)
chr6 (331-381)||(26512879-26512929)
chr6 (331-381)||(26517995-26518045)
chr6 (337-405)||(1755660-1755728)
[»] chr7 (4 HSPs)
chr7 (330-389)||(19140075-19140134)
chr7 (330-389)||(20739474-20739533)
chr7 (340-405)||(29544458-29544523)
chr7 (360-408)||(22532774-22532822)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 31320521 - 31320949
Alignment:
Q  18 gacacatggatgtttatggccattttgtcgtatagaaccttttggtgaccatcttcatccaaagaggtttctagttttagtgaacttacaccatttacaa 117  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31320521 gacacatggatgtttatggcctttttgttgtatagaaccttttggtgaccatcttcatccaaagaggtttctagttttagtgaacttacatcatttacaa 31320620  T
Q  118 ctgtagcgtgaatgtggggaccatttttgactgctttctagatttctgaaccttgtgcttcaagaaatatttgcatacaaattttctgaaaatcataggg 217  Q
    | || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  31320621 ccgtggcgtgaatgtggggaccatttttgactgctttctagatttttgaaccttgtgcttcaagaaatatctgcatacaaattttctgaaaatcatagtg 31320720  T
Q  218 ctcaccagtgaaacttggtggagggtttatgttaga-ccttcacccaaaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaaca 316  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  31320721 ctcaccagtgaaacttggtggacggtttatgttagacccttcacccaaaaactgaattacaattactcaaaagaaaataatacaaaatattctttaaaca 31320820  T
Q  317 atgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatcttcagata 416  Q
    ||||||||||||| ||||| | ||||||||| | |||||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||    
T  31320821 atgaacaaattctctaaattaactcttatttctgttcgaatgcaaataaactaactaaaaacataacaaaaaacatcatatgatgctccatcttcagata 31320920  T
Q  417 tacatagttaagagatgatttgaatacga 445  Q
    |||||||||||||||||||||||||||||    
T  31320921 tacatagttaagagatgatttgaatacga 31320949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 400
Target Start/End: Original strand, 25965410 - 25965545
Alignment:
Q  265 aaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaata 364  Q
    ||||||||||||||| |||  || || || |||||||||||||  | |||| ||| |||| | |||||||||||||||||||||||||  | |  ||| |    
T  25965410 aaactgaattacaacgactcgaatgagaagaatacaaaatattgctcaaactatgtacaactcctttaaatgacctcttatttgtctttaagtacaaaga 25965509  T
Q  365 aattaactaaaaacataaccaaaaacatcacatgat 400  Q
    || ||||||||||||||||| ||||||||| |||||    
T  25965510 aaataactaaaaacataacctaaaacatcatatgat 25965545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 408
Target Start/End: Complemental strand, 26102137 - 26101993
Alignment:
Q  264 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 363  Q
    |||| ||||||||||| |||  || ||||||||||||||||  || | |||| ||  | ||||||| ||||||||||||||||||  ||| |||| |||     
T  26102137 aaaagtgaattacaacaactcgaatgaaaacaatacaaaatggtcctcaaaccattgataaattctctaaatgacctcttatttgcgttcaaatgcaaag 26102038  T
Q  364 aaattaactaaaaacataaccaaaaacatcacatgatgctccatc 408  Q
    ||| |||||||||||||  || |||| |||| |||||||||||||    
T  26102037 aaaataactaaaaacatcgcctaaaatatcatatgatgctccatc 26101993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 406
Target Start/End: Original strand, 27461216 - 27461358
Alignment:
Q  264 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 363  Q
    |||| ||||||| ||| |||| || |||||||||||||||| ||| | |||  ||| |||| | || ||||||||||||||||||| ||| |||  ||||    
T  27461216 aaaagtgaattataacaacttgaatgaaaacaatacaaaatgttcctcaaattatggacaattgctctaaatgacctcttatttgtattcaaatacaaat 27461315  T
Q  364 aaattaactaaaaacataaccaaaaacatcacatgatgctcca 406  Q
    ||| |||||||||||||| |  |||| |||| |||| ||||||    
T  27461316 aaaataactaaaaacatagcgtaaaatatcatatgacgctcca 27461358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 15417033 - 15417125
Alignment:
Q  289 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 381  Q
    |||||||||| ||||| ||  | |||| |||||||| | |||||||||| ||||||||||||||| ||||  |||||| ||||||||||||||    
T  15417033 gaaaacaataaaaaatgtttctcaaaccatgaacaactcctttaaatgatctcttatttgtcttcaaatgcgaataaaataactaaaaacata 15417125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 401
Target Start/End: Complemental strand, 18795254 - 18795124
Alignment:
Q  271 aattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaa 370  Q
    |||||||| |||| ||| |||||| ||||||||| ||| | |||| ||  | |||| || |||||||||||||||||  |||| |||| ||| ||| | |    
T  18795254 aattacaattactcaaatgaaaacgatacaaaatgttcctcaaaccattgataaatcctctaaatgacctcttattttccttcaaatgcaaagaaaatca 18795155  T
Q  371 ctaaaaacataaccaaaaacatcacatgatg 401  Q
    ||| ||||||| || |||| |||||||||||    
T  18795154 ctagaaacatagcctaaaatatcacatgatg 18795124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 13807852 - 13807904
Alignment:
Q  329 tttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 381  Q
    |||| |||||||||||||||||||| ||||||||| || || |||||||||||    
T  13807852 tttacatgacctcttatttgtcttcaaatgtaaatgaaatatctaaaaacata 13807904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 389
Target Start/End: Complemental strand, 34381783 - 34381663
Alignment:
Q  269 tgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaatt 368  Q
    ||||||||||| |||  || |||||||||| || || ||||| |||| || ||||| | || ||||| || ||||||||| |||| |||| |||||||      
T  34381783 tgaattacaacgactcgaatgaaaacaatataatatgttcttcaaaccattaacaactcctctaaattacatcttatttgccttcaaatgcaaataaaac 34381684  T
Q  369 aactaaaaacataaccaaaaa 389  Q
     | ||||||||||||| ||||    
T  34381683 taataaaaacataacctaaaa 34381663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 408
Target Start/End: Complemental strand, 10867068 - 10866924
Alignment:
Q  264 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 363  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||| | |||| ||  |||| | || |||||||||||||||||| ||||||||  |||     
T  10867068 aaaactgaattacaacgactcaaatgaaaacaatacaaaatattcctcaaaccattgacaactactctaaatgacctcttatttgccttcgaattcaaag 10866969  T
Q  364 aaattaactaaaaacataaccaaaaacatcacatgatgctccatc 408  Q
    ||| ||||||||| |||| | ||||| |||| |||||| ||||||    
T  10866968 aaaataactaaaatcataccaaaaaatatcatatgatgttccatc 10866924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 13530165 - 13530284
Alignment:
Q  289 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 388  Q
    |||||||||||||||| ||| | |||| ||  |||  | || ||||||||||||||||||||||| | || ||| ||  |||||||||||||| || |||    
T  13530165 gaaaacaatacaaaatgttcctcaaaccatcgacatctcctctaaatgacctcttatttgtcttcaattgcaaagaatataactaaaaacatagcctaaa 13530264  T
Q  389 acatcacatgatgctccatc 408  Q
    |||||| |||||||||||||    
T  13530265 acatcatatgatgctccatc 13530284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 13619704 - 13619823
Alignment:
Q  289 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 388  Q
    |||||||||||||||| ||| | |||| ||  |||  | || ||||||||||||||||||||||| | || ||| ||  |||||||||||||| || |||    
T  13619704 gaaaacaatacaaaatgttcctcaaaccatcgacatctcctctaaatgacctcttatttgtcttcaattgcaaagaatataactaaaaacatagcctaaa 13619803  T
Q  389 acatcacatgatgctccatc 408  Q
    |||||| |||||||||||||    
T  13619804 acatcatatgatgctccatc 13619823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 12774949 - 12775021
Alignment:
Q  335 tgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccat 407  Q
    ||||||||||||||||||| ||||  || ||| |||||||||||| | ||||||  |||| ||||||||||||    
T  12774949 tgacctcttatttgtcttcaaatgctaaaaaaataactaaaaacaaagccaaaagtatcatatgatgctccat 12775021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 41505639 - 41505687
Alignment:
Q  331 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaaca 379  Q
    ||||||||||||||||||||||| |||| ||| ||| ||||||||||||    
T  41505639 taaatgacctcttatttgtcttcaaatgcaaagaaaataactaaaaaca 41505687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 24846316 - 24846200
Alignment:
Q  289 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 388  Q
    ||||| |||| ||||||||| | |||| ||| | |||| || ||||||||||||||||||||||| |||| ||| ||| |||||||||| ||| || |||    
T  24846316 gaaaaaaatataaaatattcctcaaaccatggaaaaatcctctaaatgacctcttatttgtcttcaaatgcaaagaaagtaactaaaaatatagcctaaa 24846217  T
Q  389 acatcacatgatgctcc 405  Q
    |||||| || |||||||    
T  24846216 acatcatatcatgctcc 24846200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 17459841 - 17459914
Alignment:
Q  47 gtatagaaccttttggtgaccatcttcatccaaagaggtttctagttttagtgaacttacaccatttacaactg 120  Q
    |||||||||||||| |||| ||||||||||| || | |||| | ||||| |||||||||| |||||||||||||    
T  17459841 gtatagaacctttttgtgatcatcttcatcccaacatgtttttggttttggtgaacttacgccatttacaactg 17459914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 26070487 - 26070411
Alignment:
Q  331 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatc 408  Q
    |||||||||||||||||| |||  |||| ||| ||| |||||||||||||| ||||||| |||| |||||| ||||||    
T  26070487 taaatgacctcttatttgccttaaaatgcaaagaaaataactaaaaacatagccaaaaa-atcatatgatgttccatc 26070411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 408
Target Start/End: Complemental strand, 24130703 - 24130591
Alignment:
Q  296 atacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcac 395  Q
    ||||||||| ||| | |||| ||  |||||| || ||| |||||||||||||| |||  |||| ||||| | |||||| ||||||| || |||| ||||     
T  24130703 atacaaaatgttcctcaaaccattgacaaatgctctaattgacctcttatttgccttaaaatgcaaatacaataactataaacatagcctaaaatatcat 24130604  T
Q  396 atgatgctccatc 408  Q
    || ||||||||||    
T  24130603 atcatgctccatc 24130591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 24410964 - 24411004
Alignment:
Q  264 aaaactgaattacaactacttaaaagaaaacaatacaaaat 304  Q
    |||||||||||||||| ||| ||| ||||||||||||||||    
T  24410964 aaaactgaattacaacgactcaaatgaaaacaatacaaaat 24411004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 408
Target Start/End: Complemental strand, 10576533 - 10576389
Alignment:
Q  264 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 363  Q
    |||| ||||||||||  |||  || |||||||||||||||| ||||| |||| ||| |||| |||| ||||||| |||||||||  |||| |||| |||     
T  10576533 aaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttcttcaaaccatggacaacttctctaaatgatctcttattttccttcaaatggaaag 10576434  T
Q  364 aaattaactaaaaacataaccaaaaacatcacatgatgctccatc 408  Q
    ||| ||||||||||||||  | |||| |||| ||||| |||||||    
T  10576433 aaaataactaaaaacatagtctaaaatatcatatgatactccatc 10576389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 17339915 - 17339992
Alignment:
Q  331 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatc 408  Q
    |||||| ||||||||||| |||  |||||||||||| ||| |||||||||| || |||| |||| |||||||||||||    
T  17339915 taaatgtcctcttatttgcctttaaatgtaaataaaataattaaaaacatagcctaaaatatcatatgatgctccatc 17339992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 403
Target Start/End: Original strand, 16442363 - 16442432
Alignment:
Q  333 aatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgct 403  Q
    ||||||||||||||||||||| |||| ||| ||| |||||||| ||||| || ||||||||| ||||||||    
T  16442363 aatgacctcttatttgtcttcaaatgcaaagaaa-taactaaacacatagccgaaaacatcatatgatgct 16442432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 381
Target Start/End: Complemental strand, 24925885 - 24925768
Alignment:
Q  264 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 363  Q
    |||| ||||||||| | ||| ||| |||||||||||||||| ||  | |||| ||  |||| |  |||||||||| |||||||| ||||| |||  ||||    
T  24925885 aaaagtgaattacagcgactcaaatgaaaacaatacaaaatgttactcaaacgattgacaactcttttaaatgacttcttatttatcttcaaatacaaat 24925786  T
Q  364 aaattaactaaaaacata 381  Q
    ||| ||||||||||||||    
T  24925785 aaaataactaaaaacata 24925768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 31859940 - 31860040
Alignment:
Q  289 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 388  Q
    ||||||| | |||||| ||| | |||||||  |||| |||| ||||| |||| |||||| ||||| |||| ||| ||| |||||||||||||| ||||||    
T  31859940 gaaaacagtgcaaaatgttcctcaaacaattgacaacttctctaaataaccttttatttttcttcaaatgcaaaaaaaataactaaaaacatagccaaaa 31860039  T
Q  389 a 389  Q
    |    
T  31860040 a 31860040  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 21167802 - 21167693
Alignment:
Q  271 aattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaa 370  Q
    ||||||||| |||  || |||||||||||||||| ||| |||||  ||| |||| | || |||||||| ||||||||  |||| |||| |||  || |||    
T  21167802 aattacaacaactcgaatgaaaacaatacaaaatgttccttaaaacatggacaactcctctaaatgacgtcttattttccttcaaatgcaaaacaaataa 21167703  T
Q  371 ctaaaaacat 380  Q
    ||||||||||    
T  21167702 ctaaaaacat 21167693  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 394
Target Start/End: Complemental strand, 24047462 - 24047332
Alignment:
Q  264 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 363  Q
    |||| ||||||||||  |||  || |||||||||||||||| ||| |||||| ||  |||| |||| ||||| |||||||||||  |||| |||| ||||    
T  24047462 aaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttccttaaaccattgacaatttctctaaataacctcttattttccttcaaatgcaaat 24047363  T
Q  364 aaattaactaaaaacataaccaaaaacatca 394  Q
    ||| |||||||||||||| || |||| ||||    
T  24047362 aaaataactaaaaacatagcctaaaatatca 24047332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 353
Target Start/End: Complemental strand, 18117058 - 18116974
Alignment:
Q  269 tgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttc 353  Q
    ||||||||||  ||| ||| |||||||||||||||| ||| | |||| |||| ||||| || |||||||||||| ||||||||||    
T  18117058 tgaattacaatgactcaaatgaaaacaatacaaaatgttcgtcaaaccatgaccaaatcctctaaatgacctctcatttgtcttc 18116974  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 388
Target Start/End: Original strand, 32276574 - 32276672
Alignment:
Q  290 aaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaa 388  Q
    |||||||| |||||| ||||| |||| ||  |||  | ||||||||||||||||||||  |||| |||| ||| ||| |||||||||||||| ||||||    
T  32276574 aaaacaatgcaaaatgttcttcaaaccattgacatctcctttaaatgacctcttattttccttcaaatgcaaagaaaataactaaaaacatatccaaaa 32276672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 405
Target Start/End: Complemental strand, 39730527 - 39730386
Alignment:
Q  264 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 363  Q
    |||| ||||||||||| |||| ||  ||||| ||| ||||| ||| |||||| |  ||||| |  | ||||||||| ||||||||||||| | | ||||     
T  39730527 aaaagtgaattacaacgacttgaataaaaactatagaaaatgttccttaaaccacaaacaactcatctaaatgaccccttatttgtcttcaattataaag 39730428  T
Q  364 aaattaactaaaaacataaccaaaaacatcacatgatgctcc 405  Q
    ||| |||||||||||||| || |||| || | ||||||||||    
T  39730427 aaaataactaaaaacatagcctaaaatattatatgatgctcc 39730386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 15454575 - 15454654
Alignment:
Q  274 tacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttc 353  Q
    |||||| ||| ||||||||||||||||||||  || |||||  ||  |||| | ||||||||||||| ||||||||||||    
T  15454575 tacaacgactcaaaagaaaacaatacaaaatgatccttaaagcatagacaactcctttaaatgacctattatttgtcttc 15454654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 21505250 - 21505315
Alignment:
Q  340 tcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctcc 405  Q
    |||||||||||||| |||| ||| |||   |||||||||||| ||||||| |||| ||||||||||    
T  21505250 tcttatttgtcttcaaatgcaaagaaaaatactaaaaacatagccaaaaatatcatatgatgctcc 21505315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 31450012 - 31449920
Alignment:
Q  289 gaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 381  Q
    ||||| |||||||||||||| | |||| ||  |||| | || |||||||| | | | |||||||| |||| ||||||| ||||||||||||||    
T  31450012 gaaaaaaatacaaaatattcctaaaaccatctacaactcctctaaatgacttataaattgtcttcaaatgcaaataaaataactaaaaacata 31449920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 400
Target Start/End: Original strand, 21829167 - 21829303
Alignment:
Q  264 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 363  Q
    |||||||||||||||| ||| ||| ||||| |||||||||| ||| | |||| ||  |||| | || |||||||||||||||||  |||| |||| ||||    
T  21829167 aaaactgaattacaacgactcaaatgaaaataatacaaaatgttcctcaaaccattgacaactcctctaaatgacctcttattttccttcaaatgcaaat 21829266  T
Q  364 aaattaactaaaaacataaccaaaaacatcacatgat 400  Q
    ||| ||| |||||| |||  |||||| |||| |||||    
T  21829267 aaaataaataaaaatatagtcaaaaatatcatatgat 21829303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 25919575 - 25919648
Alignment:
Q  340 tcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctccatcttcag 413  Q
    |||||||||||||| |||  ||| ||||  |||||||||||||||| ||| |||| ||||||||||||| ||||    
T  25919575 tcttatttgtcttcaaattcaaagaaatgtactaaaaacataaccagaaatatcatatgatgctccatcatcag 25919648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 401
Target Start/End: Original strand, 12972421 - 12972556
Alignment:
Q  266 aactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaataa 365  Q
    ||||||||||||||  ||| || |||| ||||||||||| |||  ||||  ||  |||| | || |||||||||||||| ||| |||| |||| ||| ||    
T  12972421 aactgaattacaacgtcttgaatgaaagcaatacaaaattttccgtaaaacattgacaactcctctaaatgacctcttagttgccttcaaatgcaaagaa 12972520  T
Q  366 attaactaaaaacataaccaaaaacatcacatgatg 401  Q
    | |||||||||||||| ||||||| |||| ||||||    
T  12972521 aataactaaaaacatagccaaaaatatcaaatgatg 12972556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 377
Target Start/End: Original strand, 9943184 - 9943297
Alignment:
Q  264 aaaactgaattacaactacttaaaagaaaacaatacaaaatattctttaaacaatgaacaaattctttaaatgacctcttatttgtcttcgaatgtaaat 363  Q
    |||| |||||||||||  ||| || || ||| ||||||||||||| | |||| ||| |||| | || |||||||||||||||||||||||   ||||||     
T  9943184 aaaagtgaattacaacagcttgaatgataactatacaaaatattcctcaaacgatggacaactcctctaaatgacctcttatttgtcttcaggtgtaaaa 9943283  T
Q  364 aaattaactaaaaa 377  Q
    ||| ||||||||||    
T  9943284 aaaataactaaaaa 9943297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 26512879 - 26512929
Alignment:
Q  331 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 381  Q
    |||||||||||||||||| |||| |||| ||| ||| ||||||||||||||    
T  26512879 taaatgacctcttatttgccttcaaatgcaaacaaaataactaaaaacata 26512929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 26517995 - 26518045
Alignment:
Q  331 taaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacata 381  Q
    |||||||||||||||||| |||| |||| ||| ||| ||||||||||||||    
T  26517995 taaatgacctcttatttgccttcaaatgcaaacaaaataactaaaaacata 26518045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 1755660 - 1755728
Alignment:
Q  337 acctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctcc 405  Q
    ||||||||||||||||| |||  ||| ||| |||||||||||||||||  | | |||| ||||||||||    
T  1755660 acctcttatttgtcttcaaattcaaagaaaataactaaaaacataacctgatatatcatatgatgctcc 1755728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 19140075 - 19140134
Alignment:
Q  330 ttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaa 389  Q
    |||||||||||||| ||||||||| |||| ||| ||| ||||| |||||||| |||||||    
T  19140075 ttaaatgacctcttttttgtcttcaaatgcaaagaaaataacttaaaacatagccaaaaa 19140134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 20739474 - 20739533
Alignment:
Q  330 ttaaatgacctcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaa 389  Q
    |||||||||||||| ||||||||| |||| ||| ||| ||||| |||||||| |||||||    
T  20739474 ttaaatgacctcttttttgtcttcaaatgcaaagaaaataacttaaaacatagccaaaaa 20739533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 29544523 - 29544458
Alignment:
Q  340 tcttatttgtcttcgaatgtaaataaattaactaaaaacataaccaaaaacatcacatgatgctcc 405  Q
    |||||||||||||| |||| ||| ||| | | |||||||||| ||||||| |||| ||||||||||    
T  29544523 tcttatttgtcttcaaatgcaaagaaaattaataaaaacatagccaaaaatatcatatgatgctcc 29544458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 22532774 - 22532822
Alignment:
Q  360 aaataaattaactaaaaacataaccaaaaacatcacatgatgctccatc 408  Q
    ||||||| |||||||||||||| || |||| |||| |||||||||||||    
T  22532774 aaataaaataactaaaaacatagcctaaaatatcatatgatgctccatc 22532822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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