View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_low_17 (Length: 523)
Name: NF13777_low_17
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_17 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0390 (1 HSPs) |
| | |
|
| [»] scaffold0786 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 223 - 521
Target Start/End: Complemental strand, 51649193 - 51648884
Alignment:
| Q |
223 |
aaatttgcatctcgaaagaaccacctccaaatattaattaggatatgtacatgatcatcatcatcacatatagtatattgatttgatatcacatatggag |
322 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
51649193 |
aaatttgcatctccaaaggaccacctctaaatattaattaggatatgtacatgatcatcatcatcacatatagtatattgatttgatatcccat--ggag |
51649096 |
T |
|
| Q |
323 |
acacttctttcagatgggatcaaatcggcaaacaatgttctctaaatgcaattttacagtcatagaaaaccatcttaaaactcaattcatattacttgca |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51649095 |
acacttctttcagatgggatcaaatcggcaaacaatgttctctaaatgcaattttgcagtcaaagaaaaccatcttaaaactcaattcatattacttgca |
51648996 |
T |
|
| Q |
423 |
acttgaaatcatatgaaaatgggagacat-----------aacagactctaatagatagtgctctttcttcctcattttca--tgtccttggaactgaaa |
509 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
51648995 |
acttgaaatcgtatgaaaatgggagacataatacatgtagaacagactctaatagatagtgctctttcttcctcattttcatctgtccttggaactggaa |
51648896 |
T |
|
| Q |
510 |
acgtcaatctaa |
521 |
Q |
| |
|
||| |||||||| |
|
|
| T |
51648895 |
acgacaatctaa |
51648884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 402 - 523
Target Start/End: Original strand, 8505207 - 8505341
Alignment:
| Q |
402 |
actcaattcatattacttgcaacttgaaatcatatgaaaatgggagacataa-----------cagactctaatagatagtgctctttcttcctcatttt |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8505207 |
actcaattcatattacttgcaacttgaaatcgtatgaaaataggagacataatacatatagaacagactctaatagatagtgctctttcttcctcatttt |
8505306 |
T |
|
| Q |
491 |
ca--tgtccttggaactgaaaacgtcaatctaagc |
523 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||||| |
|
|
| T |
8505307 |
catctgtccttggaactggaaacgacaatctaagc |
8505341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 4866169 - 4866117
Alignment:
| Q |
379 |
cagtcatagaaaaccatcttaaaactcaattcatattacttgcaacttgaaat |
431 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
4866169 |
cagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaat |
4866117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 55039882 - 55039934
Alignment:
| Q |
379 |
cagtcatagaaaaccatcttaaaactcaattcatattacttgcaacttgaaat |
431 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
55039882 |
cagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaat |
55039934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 223 - 523
Target Start/End: Complemental strand, 20604552 - 20604237
Alignment:
| Q |
223 |
aaatttgcatctcgaaagaaccacctccaaatattaattaggatatgtacatg----atcatcatcatcacatatagtatattgatttgatatcacatat |
318 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20604552 |
aaatttgcatctccaaaggaccacctctaaatattaattaggatatgtacatgcatgatcatcatcatcacatatagtatattgatttgatatcccat-- |
20604455 |
T |
|
| Q |
319 |
ggagacacttctttcagatgggatcaaatcggcaaacaatgttctctaaatgcaattttacagtcatagaaaaccatcttaaaactcaattcatattact |
418 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20604454 |
ggagacgcttctttcagatgggatcaaatcgacaaacaatgttctctaaatgcaattttgcagtcaaagaaaaccatcttaaaactcaattcatattact |
20604355 |
T |
|
| Q |
419 |
tgcaacttgaaatcatatgaaaatgggagacat-----------aacagactctaatagatagtgctctttcttcctcattttca--tgtccttggaact |
505 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20604354 |
tgcaacttgaaatcgtatgaaaatgggagacataatacatgtagaacaaactctaatagatagtgctctttcttcctcattttcatctgtccttggaact |
20604255 |
T |
|
| Q |
506 |
gaaaacgtcaatctaagc |
523 |
Q |
| |
|
| ||||| |||||||||| |
|
|
| T |
20604254 |
ggaaacgacaatctaagc |
20604237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 44619588 - 44619476
Alignment:
| Q |
112 |
aacccttctttctctcccaaatactattttttccattgctcttatatcaatgtttcgatttttattctcagaacataggttagttgctttaatttcaatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| ||| |
|
|
| T |
44619588 |
aacccttctttctctcccaaatactatttttttcattgctcttatatcatagtttcgatttttattctcagcacataggttagtttctttaatttcgatt |
44619489 |
T |
|
| Q |
212 |
gggtttctctcaa |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44619488 |
gggtttctctcaa |
44619476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 30402650 - 30402702
Alignment:
| Q |
379 |
cagtcatagaaaaccatcttaaaactcaattcatattacttgcaacttgaaat |
431 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
30402650 |
cagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaat |
30402702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 30409207 - 30409259
Alignment:
| Q |
379 |
cagtcatagaaaaccatcttaaaactcaattcatattacttgcaacttgaaat |
431 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
30409207 |
cagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaat |
30409259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 35164462 - 35164410
Alignment:
| Q |
379 |
cagtcatagaaaaccatcttaaaactcaattcatattacttgcaacttgaaat |
431 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
35164462 |
cagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaat |
35164410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 223 - 523
Target Start/End: Original strand, 30847991 - 30848301
Alignment:
| Q |
223 |
aaatttgcatctcgaaagaaccacctccaaatattaattaggatatgtacatgatcatcatcatcacatatagtatattgatttgatatcacatatggag |
322 |
Q |
| |
|
|||||||| |||| |||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
30847991 |
aaatttgc-tctccaaaggaccacctccaaaaattaattaggatatgtacatcatcataatcatcacatatagtatattgatttgatatcc--tgtggag |
30848087 |
T |
|
| Q |
323 |
acacttctttcagatgggatcaaatcggcaaacaatgttctctaaatgcaattttacagtcatagaaaaccatcttaaaactcaattcatattacttgca |
422 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30848088 |
acacttcttttagatgggatcaaatcggcaaacaatgttctctaattgcaattttgcagtcaaagaaaaccatcttaaaactcaattcatattacttgca |
30848187 |
T |
|
| Q |
423 |
acttgaaatcatatgaaaatgggagacat-----------aacagactctaatagatagtgctctttcttcctcattttcat--gtccttggaactgaaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| | |||||||||| || || |
|
|
| T |
30848188 |
acttgaaatcatatgaaaatgggagacataatacatgtagaacagactctaatagatagtgctttttgttcctcattttcctcagtccttggaagtggaa |
30848287 |
T |
|
| Q |
510 |
acgtcaatctaagc |
523 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
30848288 |
gcgacaatctaagc |
30848301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 11144404 - 11144352
Alignment:
| Q |
379 |
cagtcatagaaaaccatcttaaaactcaattcatattacttgcaacttgaaat |
431 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
11144404 |
cagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaat |
11144352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 223 - 453
Target Start/End: Complemental strand, 3004860 - 3004628
Alignment:
| Q |
223 |
aaatttgcatctcgaaagaaccacctccaaatattaattaggatatgtacatgatcatcatcatcacata---tagtatattgatttgatatcacatatg |
319 |
Q |
| |
|
||||| ||||||| |||| ||||||||| |||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||||| ||| | |
|
|
| T |
3004860 |
aaattagcatctccaaaggaccacctcccaatatttattaggatatgtacat---catcgtcatcacataaagtagtatattgatttgatatcccat--g |
3004766 |
T |
|
| Q |
320 |
gagacacttctttc----agatgggatcaaatcggcaaacaatgttctctaaatgcaattttacagtcatagaaaaccatcttaaaactcaattcatatt |
415 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||||||||||||||||| |||||||| | |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
3004765 |
gagacacttctttctttcagataggattaaatcggcaaacaatgttctcttaatgcaatatcgcagtcaaagaaaactatcttaaaactcaattcatatt |
3004666 |
T |
|
| Q |
416 |
acttgcaacttgaaatcatatgaaaatgggagacataa |
453 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
3004665 |
acttgcaacttgatataatatgaaaatgggagacataa |
3004628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 223 - 420
Target Start/End: Complemental strand, 54654862 - 54654663
Alignment:
| Q |
223 |
aaatttgcatctcgaaagaaccacctccaaatattaattaggatatgtacatgatcatcatcatcacata---tagtatattgatttgatatcacatatg |
319 |
Q |
| |
|
||||| ||||||| |||| ||||||||| |||||| |||||||||||||| |||||| |||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
54654862 |
aaattagcatctccaaaggaccacctcccaatatttattaggatatgtac---atcatcgtcatcacataaagtagtatattgatttgatatccc--atg |
54654768 |
T |
|
| Q |
320 |
gagacac----ttctttcagatgggatcaaatcggcaaacaatgttctctaaatgcaattttacagtcatagaaaaccatcttaaaactcaattcatatt |
415 |
Q |
| |
|
||||||| |||||||||||||||| |||||| ||||||||||||||| || |||| | ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
54654767 |
gagacacttctttctttcagatgggattaaatcgacaaacaatgttctcttgatacaatatcgtagtcaaagaaaactatcttaaaactcaattcatatt |
54654668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 242 - 363
Target Start/End: Original strand, 1065553 - 1065672
Alignment:
| Q |
242 |
accacctccaaatattaattaggatatgtacatgatcatcatcatcacatatagtatattgatttgatatcacatatggagacacttctttcagatggga |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||| | | ||||||||||||||| ||||| || | ||||||||||||| |||||||| |
|
|
| T |
1065553 |
accacctccaaatattaattaggatatgtatatagtcatcatcacaaaaaatagtatattgatttcatatcccaaa--gagacacttcttttagatggga |
1065650 |
T |
|
| Q |
342 |
tcaaatcggcaaacaatgttct |
363 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
1065651 |
tcaaatcggcaaacattgttct |
1065672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 42094340 - 42094391
Alignment:
| Q |
400 |
aaactcaattcatattacttgcaacttgaaatcatatgaaaatgggagacat |
451 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
42094340 |
aaactcaatttaaattacttgcaacttgaaataatatgaaaatggaagacat |
42094391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 364
Target Start/End: Complemental strand, 1117 - 984
Alignment:
| Q |
229 |
gcatctcgaaagaaccacctccaaatattaattaggatatgtacatgatcatcatcatcacatatagtatattgatttgatatcacatatggagacactt |
328 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||| || ||||||||| | | | |||||||||||| ||||| || | ||||||||| |
|
|
| T |
1117 |
gcatctccaaaggaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaaa--gagacactt |
1020 |
T |
|
| Q |
329 |
ctttcagatgggatcaaatcggcaaacaatgttctc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1019 |
ctttcagatgggatcaaatcggcaaacattgttctc |
984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 27485431 - 27485589
Alignment:
| Q |
68 |
actcaaagcattctcttcgccgcaaccttccatggtaacgtcacaacccttctttctctcccaaatactattttttccattgctcttatatcaat----g |
163 |
Q |
| |
|
|||| |||| |||||||| |||||||||||| ||||||| || |||||| ||||||| | |||| |||||||| |||||| ||||||||| | | |
|
|
| T |
27485431 |
actcgaagcgttctcttccccgcaaccttccctggtaacatcgcaacccctctttctt--ctaaattttatttttttcattgcccttatatcagtcaaag |
27485528 |
T |
|
| Q |
164 |
tttcgatttttattctcagaacataggttagttgctttaatttcaattgggtttctctcaa |
224 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27485529 |
tttcgatttttattctcagcacgtaggttagtttctttaatttcaattgggtttctctcaa |
27485589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 13950021 - 13949969
Alignment:
| Q |
379 |
cagtcatagaaaaccatcttaaaactcaattcatattacttgcaacttgaaat |
431 |
Q |
| |
|
|||||| ||||||| | |||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
13950021 |
cagtcaaagaaaactaccttaaaactcaatttaaattacttgcaatttgaaat |
13949969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 229 - 364
Target Start/End: Original strand, 22140163 - 22140296
Alignment:
| Q |
229 |
gcatctcgaaagaaccacctccaaatattaattaggatatgtacatgatcatcatcatcacatatagtatattgatttgatatcacatatggagacactt |
328 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||| || ||||||||| | | | |||||||||||| ||||| || | ||||||||| |
|
|
| T |
22140163 |
gcatctccaaaggaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaaa--gagacactt |
22140260 |
T |
|
| Q |
329 |
ctttcagatgggatcaaatcggcaaacaatgttctc |
364 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
22140261 |
ctttcggatgggatcaaatcggcaaacattgttctc |
22140296 |
T |
|
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Target: scaffold0786 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 229 - 364
Target Start/End: Complemental strand, 2585 - 2452
Alignment:
| Q |
229 |
gcatctcgaaagaaccacctccaaatattaattaggatatgtacatgatcatcatcatcacatatagtatattgatttgatatcacatatggagacactt |
328 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||||||||||||| || ||||||||| | | | |||||||||||| ||||| || ||| |||||||| |
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|
| T |
2585 |
gcatctccaaaggaccacctccaaagattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatccca-atg-agacactt |
2488 |
T |
|
| Q |
329 |
ctttcagatgggatcaaatcggcaaacaatgttctc |
364 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| |
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|
| T |
2487 |
ctttcagatgggatcaaatcggaaaacattgttctc |
2452 |
T |
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