View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_18 (Length: 508)
Name: NF13777_low_18
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_18 |
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| [»] scaffold0116 (3 HSPs) |
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| [»] scaffold0933 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0116 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 3 - 493
Target Start/End: Original strand, 3868 - 4356
Alignment:
| Q |
3 |
cgagagagaagaaatatagcattgttcatttccagtataacaacaaagaccttagcataagaaaaataccaacccgtaacatttataagcaaacattgct |
102 |
Q |
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| T |
3868 |
cgagtgaggagaaatatagcattgttcatttccagtataacaacaacgaacttagcataagaaatataccaacccgtaacatttataatcaaacattgct |
3967 |
T |
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| Q |
103 |
ttctcgattcaactttagaaaaggttacaaaattatgacagtggnnnnnnnnctttctctacctgaatgcaatgatatatatttgctatcaagagatgaa |
202 |
Q |
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| T |
3968 |
ttctcgattcaactttagaaaaggttacaaaattatgacagtggaaaaaaatctttctctacctgaatgcaaagatatatatttgctatcaagagatgaa |
4067 |
T |
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| Q |
203 |
attagaacttaccgaagcaagtatcagtatcttcatattgggttggtgcaatttgctatggttgaacctgcatcggatcgagtacacacttatatttggc |
302 |
Q |
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| T |
4068 |
attagaacttaccgaagcaagtatcaatatcttcatattgggttggtgcaatttgctatggttgaacctgcatcggatcgagaacacacttatatttggc |
4167 |
T |
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| Q |
303 |
aaggaaagattcgagcagtctctttatcagtaagattaagagattctaagttccaaaatcttgaagactctatcttggtaagttttaaaacaacagagag |
402 |
Q |
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| T |
4168 |
aaggaaagtatcgagcagtctctttatcagtaagattaagagattctaagttccaaaatcttgaagactctatcttggtaagttttaaaaca--agagag |
4265 |
T |
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| Q |
403 |
taaagatggtactgccgtaaagtttaattggtttccgaatttttcaatctctttgtttgatctagcaaattcaaacggtttggtggttact |
493 |
Q |
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| T |
4266 |
tgaagatggtactgccgtaaagtttaattggtttccgaatttttcaatctctttgtttgatctagcaaattcaaacggtttggtggttact |
4356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 420 - 489
Target Start/End: Original strand, 7334 - 7403
Alignment:
| Q |
420 |
taaagtttaattggtttccgaatttttcaatctctttgtttgatctagcaaattcaaacggtttggtggt |
489 |
Q |
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| T |
7334 |
taaactttaattggtttccgaatttttcgacctctttgtttgatctagcaaattccaacggcttggtggt |
7403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 18731 - 18810
Alignment:
| Q |
182 |
tatttgctatcaagagatgaaattagaacttaccgaagcaagtatcagtatcttcatattgggttggtgcaatttgctat |
261 |
Q |
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| T |
18731 |
tatttgctatcaagagatgacattagaagtcatagaagtaactataattttcttcatattgggttggtacaattttctat |
18810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0933 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0933
Description:
Target: scaffold0933; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 79 - 493
Target Start/End: Original strand, 3237 - 3649
Alignment:
| Q |
79 |
taacatttataagcaaacattgctttctcgattcaactttagaaaaggttacaaaattatgacagtggnnnnnnnnctttctctacctgaatgcaatgat |
178 |
Q |
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| T |
3237 |
taacatttataagcaaacattgctttctcgattcaactttagaaaaggttacaaaattatgacagtggaaaaaaatctttctctacctgaatgcaatgat |
3336 |
T |
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| Q |
179 |
atatatttgctatcaagagatgaaattagaacttaccgaagcaagtatcagtatcttcatattgggttggtgcaatttgctatggttgaacctgcatcgg |
278 |
Q |
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| T |
3337 |
atatatttgccatcaagagatgaaattagaacttaccgaagcaagtatcaatatcttcatattgggttggtgcaatttgctatggttgaacctgcatcgg |
3436 |
T |
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| Q |
279 |
atcgagtacacacttatatttggcaaggaaagattcgagcagtctctttatcagtaagattaagagattctaagttccaaaatcttgaagactctatctt |
378 |
Q |
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| T |
3437 |
atcgaattcacactcaaatttttcaaggaaagaatcgagcagtctctttatcagtaagattaagagattctaagttccaaaatcttgaagactctatctt |
3536 |
T |
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| Q |
379 |
ggtaagttttaaaacaacagagagtaaagatggtactgccgtaaagtttaattggtttccgaatttttcaatctctttgtttgatctagcaaattcaaac |
478 |
Q |
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| T |
3537 |
ggtaagttttaaaacaacagagagtgaagatggcactgccgtaaagtttaattggtttccgaatttttcaatctc--tgtttgatctagcaaattcaaac |
3634 |
T |
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| Q |
479 |
ggtttggtggttact |
493 |
Q |
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| T |
3635 |
ggtttggtggttact |
3649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 37803 - 37866
Alignment:
| Q |
81 |
acatttataagcaaacattgctttctcgattcaactttagaaaaggttacaaaattatgacagt |
144 |
Q |
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| T |
37803 |
acatttataagcaaacattgctttctcgattcaacttcatgaaaggttacaaaattataacagt |
37866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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