View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_2 (Length: 1078)
Name: NF13777_low_2
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Original strand, 29649792 - 29650290
Alignment:
| Q |
11 |
agaacctgtgtcaaacatcaacaaagttgtgaatggtggtgtgccaatcctcatttcaacagcatatatgttagaaatagttggcacaagtggttgaaaa |
110 |
Q |
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| T |
29649792 |
agaacctgtgtcaaacatcaacaaagttgtgaatggtggtgtgccaatcctcatttcaacagcatatatgttagaaatagttgggacaagtggttgaaaa |
29649891 |
T |
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| Q |
111 |
gtttgtggggatattgcattggtgttgttcatttgatacttaagagcatgaatttttgagagttggactaatttattgtgtttctcttcaagagaaatgt |
210 |
Q |
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| T |
29649892 |
gtttgtggggatattgcattggtgttgttcatttgatacttaagagcatgaatttttgagagttggactaatctattgtgtttctcttcaagagaaatgt |
29649991 |
T |
|
| Q |
211 |
ttttgggaaagagcaatgaatcaaagtttactcgtgggattaatttcattgagaaagacatggttcctatgggaatgtagacacaaaataacacaaagag |
310 |
Q |
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| T |
29649992 |
ttttgggaaagagaattgaatcaaagtttactcgtgggattaatttcattgagaaagacatggttcctatgggaatgtagacacaaaataacacaaagag |
29650091 |
T |
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| Q |
311 |
tgttaagaaactaaatgaagaagccattttcattatatgatcaatgtgcttttgtgttatgtttgttaggattgtgaagcaaactagctcttttatacac |
410 |
Q |
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| T |
29650092 |
tgttaagaaactaaatgaagaagccatttttattatatgatcaatgtgcttttgtgttatgtttgttaggattgtgaagcaaactagctcttttatacac |
29650191 |
T |
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| Q |
411 |
acacacatggctagggtttcatactcttaattatgtgacattgacattaaactaacaccactttttcttaaattcatttgactctctctttctatttct |
509 |
Q |
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| T |
29650192 |
acacacatggctagggtttcatactcttaattatgtgacattgacattaaactaacaccactttttcttaaattcatttgactctctctttctatttct |
29650290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 691 - 1060
Target Start/End: Original strand, 29650442 - 29650813
Alignment:
| Q |
691 |
gctatattctattaatctcatatatctcttttgagttcattagaataaattaaggtatgaacaaattcaattttgagaagaaacaaaacctgacgaaatg |
790 |
Q |
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| T |
29650442 |
gctatattctattaatctcagatatctcttttgagttcattagaataaattaaggtgtgaacaaattcaattttgtgaagaaacaaaacctgacgaaatg |
29650541 |
T |
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| Q |
791 |
tgaacataaggaattcaaagcaaggcaagggtcccaatagaaataactcctgcttgcattcggaaaagattttatgttttcattttctaaaatttagttt |
890 |
Q |
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| T |
29650542 |
tgaacataagaaattcaaagcaaggcaagggtcccaatagaaataactcctgcttgcattcggaaaagattttatgttttcattttctaaaatttagttt |
29650641 |
T |
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| Q |
891 |
cttttaaatgctagcacatggaagacttatgcagtgaaaaactgtgatagagagcagatgtaattcattttcgtaaacaatggaaaagatgctttgaaat |
990 |
Q |
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| T |
29650642 |
cttttaaatgctaacacatggaagacttatgcagttaaaaactgtgatagagagcagatgtaattcattttcgtaaacaatggaaaagatgctttgaaat |
29650741 |
T |
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| Q |
991 |
ttcaaattttttgtgagtg--tatataggccgtgctatggtacatttatgttttttgttaagtagtttaatg |
1060 |
Q |
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| T |
29650742 |
ttcaaattttttgtgtgtgtatatataggtcgtgctatggtacagttatgttttttgtgaagtagtttaatg |
29650813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 540 - 593
Target Start/End: Original strand, 29650290 - 29650343
Alignment:
| Q |
540 |
tgtttaacaacttcaactttctcacgttataatggttcacattcaagcactgcc |
593 |
Q |
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| T |
29650290 |
tgtttaacaacttcaactttctcacgttataatggttcacattcaagcactgcc |
29650343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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