View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_21 (Length: 501)

Name: NF13777_low_21
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_21
NF13777_low_21
[»] chr7 (9 HSPs)
chr7 (1-486)||(46532887-46533381)
chr7 (1-211)||(37338684-37338892)
chr7 (370-476)||(46525003-46525109)
chr7 (1-237)||(27616358-27616582)
chr7 (13-178)||(32716466-32716630)
chr7 (37-109)||(44572487-44572559)
chr7 (1-94)||(45215999-45216092)
chr7 (1-95)||(22290895-22290989)
chr7 (110-211)||(10678435-10678534)
[»] chr6 (9 HSPs)
chr6 (1-235)||(1255557-1255791)
chr6 (2-183)||(12843937-12844118)
chr6 (7-211)||(17540056-17540260)
chr6 (1-235)||(14494335-14494568)
chr6 (54-235)||(57082-57263)
chr6 (78-183)||(34709062-34709167)
chr6 (3-183)||(19542173-19542354)
chr6 (1-74)||(34708961-34709034)
chr6 (1-76)||(19294418-19294490)
[»] chr5 (4 HSPs)
chr5 (1-293)||(32676474-32676764)
chr5 (40-211)||(40837975-40838144)
chr5 (1-129)||(38989253-38989379)
chr5 (1-48)||(40837839-40837886)
[»] chr4 (6 HSPs)
chr4 (1-231)||(17732806-17733038)
chr4 (1-235)||(40289050-40289281)
chr4 (1-178)||(31734528-31734703)
chr4 (40-235)||(45612333-45612530)
chr4 (87-158)||(3419971-3420042)
chr4 (41-180)||(44507760-44507900)
[»] chr3 (10 HSPs)
chr3 (1-233)||(21408750-21408989)
chr3 (1-211)||(43921863-43922072)
chr3 (1-235)||(11410716-11410949)
chr3 (1-158)||(10516137-10516295)
chr3 (80-235)||(26565412-26565566)
chr3 (1-235)||(10657334-10657567)
chr3 (80-183)||(14218511-14218615)
chr3 (13-158)||(27063785-27063931)
chr3 (13-95)||(49860462-49860544)
chr3 (12-73)||(2227278-2227339)
[»] chr1 (9 HSPs)
chr1 (37-211)||(32740918-32741090)
chr1 (1-235)||(48632480-48632712)
chr1 (1-93)||(23431900-23431992)
chr1 (39-145)||(126323-126430)
chr1 (13-134)||(3387700-3387821)
chr1 (1-95)||(18476539-18476634)
chr1 (116-231)||(18488357-18488471)
chr1 (1-135)||(3954983-3955117)
chr1 (1-129)||(9148999-9149127)
[»] chr2 (9 HSPs)
chr2 (1-235)||(26576094-26576329)
chr2 (6-160)||(34409551-34409706)
chr2 (1-115)||(9929664-9929778)
chr2 (100-205)||(13039011-13039116)
chr2 (13-129)||(44649967-44650084)
chr2 (97-183)||(9929778-9929864)
chr2 (1-183)||(27004068-27004253)
chr2 (1-76)||(32200877-32200952)
chr2 (1-75)||(13037341-13037415)
[»] chr8 (8 HSPs)
chr8 (1-183)||(28421074-28421256)
chr8 (1-235)||(1226089-1226323)
chr8 (13-145)||(44502336-44502468)
chr8 (13-183)||(15131915-15132085)
chr8 (70-211)||(18602989-18603130)
chr8 (13-129)||(18393552-18393668)
chr8 (1-326)||(15850259-15850585)
chr8 (232-313)||(18602879-18602961)
[»] scaffold0325 (1 HSPs)
scaffold0325 (13-135)||(12923-13046)


Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 46532887 - 46533381
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||    
T  46532887 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctgctgtcaaaaaagctaaaaatgttataatcaattgta 46532986  T
Q  101 atgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46532987 atgtttataacccctaattgatcaacattcctcaaaatatatgtagctcttgtatctatgatttgtgtaagcaagagagaaaaaaactgtttcagatatt 46533086  T
Q  201 tgtctaagttgccccgacatggctcgtatgagtgtcagacaccggttttaggagtctcgaattaaaggaaaaacaactttatttaggatatcgattttaa 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  46533087 tgtctaagttgccccgacatggctcgtatgagtgtcggacaccggttctaggagtctcgaattaaaggaaaaacaactttatttaggatatcgattgtag 46533186  T
Q  301 ttatccggcacgtatcgtac-----------gagtgttggacaccgcgacgcggttagtcctagaggtgtcgcttcataggtgataattattaatcacca 389  Q
    || || ||||||||||||||           |||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  46533187 ttgtctggcacgtatcgtacaagtattagaggagtgtcggacaccgcgacgcggttagtcctagaggtgt--cttcataggtgataattattaatcacca 46533284  T
Q  390 atatattcccacttggaaacatttatttttgttggcaccgattttcatttgtttcctcttgtttgtctaattctccggctaagtaactctttatttt 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46533285 atatattcccacttggaaacatttatttttgttggcaccgattttcatttgtttcctcttgtttgtctatttctccggctaagtaactctttatttt 46533381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 37338892 - 37338684
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| ||||| ||| | ||| |||||| | |||||||||||| || |||||||| ||||||||||||||||| |||||||||| ||||| | ||    
T  37338892 ttatttcattagaaaatgttatcaaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaagttaaaaatgttattatcaacttta 37338793  T
Q  101 atgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatt 200  Q
    ||||||| || |||||||||||||||||| ||||||  ||||||| | |||||||||| | | |||| ||||||||||||||  || |||||||||||||    
T  37338792 atgtttaaaatccctaattgatcaacatttctcaaagcatatgtaactcttgtatctacggtatgtggaagcaagagagaaa--aaatgtttcagatatt 37338695  T
Q  201 tgtctaagttg 211  Q
    ||||| |||||    
T  37338694 tgtctgagttg 37338684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 370 - 476
Target Start/End: Original strand, 46525003 - 46525109
Alignment:
Q  370 gtgataattattaatcaccaatatattcccacttggaaacatttatttttgttggcaccgattttcatttgtttcctcttgtttgtctaattctccggct 469  Q
    |||||||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||    
T  46525003 gtgataattattaaacaccactatattcccacttagaaatatttatttttgttggcaccgattttcatttgtttccgcttgtttgtcaatttctccgcct 46525102  T
Q  470 aagtaac 476  Q
    || ||||    
T  46525103 aactaac 46525109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27616358 - 27616582
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||| ||| ||| ||||||||||| |||||| | |||||||||||  || ||||| || ||||||||| ||||| | |||||||||||||||| | ||    
T  27616358 ttatttaattagaacaagttctaaaacaagatatcatagtatttgacttttatttatacatctactatcagaaaagctaaaaatgttataatcaacttta 27616457  T
Q  101 atgtttataa-cccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatat 199  Q
    |||| ||||| ||||||||||| || |||| |||||           | |||||||||| ||  |||| ||||||||||||||| || ||||||||||||    
T  27616458 atgtctataaccccctaattgaccatcatttctcaa-----------ctcttgtatctacgacgtgtggaagcaagagagaaaa-aaatgtttcagatat 27616545  T
Q  200 ttgtctaagttgccccgacatggctcgtatgagtgtca 237  Q
    |||||| |||||  |||||| |||| ||||||||||||    
T  27616546 ttgtctgagttg-tccgacacggcttgtatgagtgtca 27616582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 32716630 - 32716466
Alignment:
Q  13 aaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacc 112  Q
    |||||||||||||| ||||||   |||||||||| | || |||||||| | |||||| |||||||| |||||| |  |||||||| |||||| ||||| |    
T  32716630 aaaaagttctaaaacaagatacaatagtatttgatctttatttattcatccactatcgaaaaagttaaaaatggtgcaatcaattttaatgtctataatc 32716531  T
Q  113 cctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagaga 178  Q
    ||| ||| ||||| ||| ||||| ||||||||| | ||||||| |||||| |||| ||| ||||||    
T  32716530 cctcatt-atcaaaatttctcaatatatatgtaactcttgtatttatgatgtgtggaagtaagaga 32716466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 44572559 - 44572487
Alignment:
Q  37 tagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttata 109  Q
    |||||||||||| || |||||||| ||||||||||||||| | |||||| |||||||||||||||||| ||||    
T  44572559 tagtatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaattgtaatgtatata 44572487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 45216092 - 45215999
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatca 94  Q
    |||| ||||| |||||||||||| ||||||||  | || ||||||||| || |||||||| ||||| ||||||||| | |||||| ||||||||    
T  45216092 ttatgtcattagaaaaagttctacaataagatgtcatattatttgacctttatttattcatctactgtcaaaaaagctaaaaatgatataatca 45215999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 22290895 - 22290989
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaa 95  Q
    ||||||||||  ||||||||||| || |||||| | | |||||||||| || |||||| | ||||||||||||||| | |||||  |||||||||    
T  22290895 ttatttcattaaaaaaagttctacaacaagatatcattgtatttgacctttatttattaatctactatcaaaaaagctaaaaattatataatcaa 22290989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 10678435 - 10678534
Alignment:
Q  110 acccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatttgtctaagt 209  Q
    |||||||||||||||| ||| ||||||| ||| ||| | |||||||||| | | |||| |||||||||| |||| || ||||| | |||||||||| |||    
T  10678435 acccctaattgatcaatatttctcaaaacatacgtaactcttgtatctacggtatgtggaagcaagaga-aaaagaaatgttt-aaatatttgtctgagt 10678532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1255791 - 1255557
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||| ||| ||||||||||||||| |||||| |||||||||||||  || |||||  | || |||||||||||| | |||||||||||||||| ||||    
T  1255791 ttattttattagaaaaagttctaaaacaagatatcgtagtatttgacatttatttatgtatctgctatcaaaaaagctaaaaatgttataatcaactgta 1255692  T
Q  101 atgtttataa-cccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatat 199  Q
    |||| ||||| |||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||| |||||||||||||||  | |||||  |||||    
T  1255691 atgtctataaccccctaattgatcaacattcctcaaaacctatgtagctcttgtatctattatttgtggaagcaagagagaaaaataatgttt-tgatat 1255593  T
Q  200 ttgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    |||||| ||||||||| |||  ||||||||| ||||    
T  1255592 ttgtctgagttgcccctacacagctcgtatgcgtgt 1255557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 12843937 - 12844118
Alignment:
Q  2 tatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaa 101  Q
    ||||||||| ||| |||||||| ||||||||| | |||||||||||| || |||||||| ||||||||||||||| | |||||| ||||||||| | |||    
T  12843937 tatttcattagaacaagttctacaataagatatcatagtatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataa 12844036  T
Q  102 tgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaa 183  Q
    ||| |||||||||||||||||||||||| ||||||| ||||||| | |||||||||||| |  ||| |||||||||||||||    
T  12844037 tgtgtataacccctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgcgtggaagcaagagagaaaa 12844118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 17540056 - 17540260
Alignment:
Q  7 catttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgttt 106  Q
    |||| |||||||||||  ||||||||| | |||||||||||| || |||||| | ||||||||||||||| | |||||| ||||||||| | |||  |||    
T  17540056 cattagaaaaagttctgcaataagatatcatagtatttgacctttatttatttatctactatcaaaaaagctaaaaatgatataatcaactataactttt 17540155  T
Q  107 ataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatttgtcta 206  Q
    ||||||||||||||||||||||| ||||||| ||||||| | |||||||||||| | || | ||||||||||||||| || ||||| ||||||||||||     
T  17540156 ataacccctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagagaaaaaaattgttttagatatttgtctg 17540255  T
Q  207 agttg 211  Q
    |||||    
T  17540256 agttg 17540260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 14494568 - 14494335
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| |||||||||||| || || ||| | |||||||||||| || |||||||  ||| ||||||||||||| |||||| ||||||||| | |     
T  14494568 ttatttcattagaaaaagttctacaacaaaatatcatagtatttgacctttatttattcgtctattatcaaaaaagttaaaaatgatataatcaactatg 14494469  T
Q  101 atgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatt 200  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||   |||||||||||| | |||| || ||| ||||||||||| ||||| |||||||    
T  14494468 atgtctataacccctaattgatcaacatttctcaaaacatatgtaattcttgtatctatggtgtgtggaaacaatagagaaaacaattgtttaagatatt 14494369  T
Q  201 tgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    ||| | |||||  |||||| ||||||||| |||||    
T  14494368 tgtgtgagttg-tccgacacggctcgtattagtgt 14494335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 57082 - 57263
Alignment:
Q  54 ttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataaccc-ctaattgatcaacattcctcaaaatatatgtagcacttg 152  Q
    ||||||| ||||||||||||||| | |||||||||||||||| | |||||| |||||||| ||| |||||||||||| ||| ||| ||||||| | ||||    
T  57082 ttattcatctactatcaaaaaaggtaaaaatgttataatcaactttaatgtctataaccctctagttgatcaacatttctccaaacatatgtaactcttg 57181  T
Q  153 tatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatttgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    |||||| | | |||| |||||||||||||||  | |  || |||||||| ||| |||||  |||||| |||||||||||||||    
T  57182 tatctacggtatgtggaagcaagagagaaaaataataatttagatatttatcttagttg-tccgacacggctcgtatgagtgt 57263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 34709062 - 34709167
Alignment:
Q  78 ttaaaatgttataatcaattgtaatgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagag 177  Q
    |||||||| ||||||||| | |||||| ||||||||||||||||||||||||  ||||||||||| || | ||| ||||||||   |||| |||||||||    
T  34709062 ttaaaatgatataatcaactataatgtatataacccctaattgatcaacatttttcaaaatatatataactcttatatctatggcgtgtgaaagcaagag 34709161  T
Q  178 agaaaa 183  Q
    ||||||    
T  34709162 agaaaa 34709167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 19542173 - 19542354
Alignment:
Q  3 atttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaat 102  Q
    |||||||| |||||| |||||||| || ||| | ||||||||| || || |||||||| |||||||||| || | | ||| |||||||||||| | ||||    
T  19542173 atttcattggaaaaaattctaaaacaaaatatcttagtatttgtcctttatttattcatctactatcaagaatgctaaaattgttataatcaactttaat 19542272  T
Q  103 gtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatt-tgtgtaagcaagagagaaaa 183  Q
     | | |||||| |||||| |||| ||| ||||||| | ||||| | ||||||| || | || |||| |||||||||||||||    
T  19542273 atctctaacccttaattgttcaatatttctcaaaacaaatgtaactcttgtatgtacggttatgtggaagcaagagagaaaa 19542354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34708961 - 34709034
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaa 74  Q
    |||||||||| |||||||||||  || |||||| | |||||||||||| || |||||||| ||||||| |||||    
T  34708961 ttatttcattagaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctactataaaaaa 34709034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 19294418 - 19294490
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaag 76  Q
    |||||||||| ||||||||||   || |||||| | |||||||||||| || |||||||| ||||||| |||||||    
T  19294418 ttatttcattagaaaaagttc---aacaagatatcatagtatttgacctttatttattcatctactatgaaaaaag 19294490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 32676764 - 32676474
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| ||||||||| ||||| |||||| | || ||||||| | || |||||||| ||||||||||||||||| |||||||||||||||| | ||    
T  32676764 ttatttcattagaaaaagttataaaacaagatatcatattatttgatc-ttatttattcatctactatcaaaaaagttaaaaatgttataatcaacttta 32676666  T
Q  101 atgtttata-acccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaac-tgtttcagata 198  Q
    |||| ||||  ||||||||||| ||||||| ||||||| ||||||| | ||||||| ||  || |||| ||||||||||||||| ||| ||||| |||||    
T  32676665 atgtctatatccccctaattgaacaacatttctcaaaacatatgtaactcttgtatttacaatgtgtggaagcaagagagaaaaaaacttgtttaagata 32676566  T
Q  199 tttgtctaagttgccccgacatggctcgtatgagtgtcagacaccggttttaggagtctcgaattaaaggaaaaacaactttatttaggatatcg 293  Q
    |||||||||||||    ||||  ||||||||||  || | ||||||||  ||||||| ||||| ||||| |||||||| ||||||||||| ||||    
T  32676565 tttgtctaagttg-tttgacacagctcgtatga--gttatacaccggtcctaggagtgtcgaagtaaagaaaaaacaattttatttaggacatcg 32676474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 40837975 - 40838144
Alignment:
Q  40 tatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacccctaattgatcaacattcctcaaaata 139  Q
    ||||||||| || |||||||| ||||||||||||| | | ||||||||||||| || | |||||||||| |||||||||||||||||||| ||||||| |    
T  40837975 tatttgacctttatttattcatctactatcaaaaa-gctaaaaatgttataataaactataatgtttattacccctaattgatcaacatttctcaaaaca 40838073  T
Q  140 tatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatttgtctaagttg 211  Q
    |||||| | |||||||||| | | | || ||||||||| ||||| || ||||| ||| |||||||| |||||    
T  40838074 tatgtaactcttgtatctacggtatctggaagcaagag-gaaaaaaaatgttttagacatttgtctgagttg 40838144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 38989379 - 38989253
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||| ||||| |||||||||||| || |||||| | |||||||||||  || |||||||| |||||||||||| | || |||||| |||||||||   ||    
T  38989379 ttatgtcattagaaaaagttctacaacaagatatcatagtatttgacttttatttattcatctactatcaaaagatttaaaaatgatataatcaa--ata 38989282  T
Q  101 atgtttataacccctaattgatcaacatt 129  Q
    |||| ||||||||||||||||||||||||    
T  38989281 atgtctataacccctaattgatcaacatt 38989253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40837839 - 40837886
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgacc 48  Q
    |||||||||| ||||||||||||||| ||||||  |||||||||||||    
T  40837839 ttatttcattagaaaaagttctaaaacaagatattgtagtatttgacc 40837886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 17732806 - 17733038
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattg-tttattcacctactatcaaaaaagtttaaaatgttataatcaattgt 99  Q
    |||||||||| ||||||||||||||  |||||| |||||||||||||| ||  |||||||| ||||||||||||||| | |||||||||||||||| |||    
T  17732806 ttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctactatcaaaaaagctaaaaatgttataatcaactgt 17732905  T
Q  100 aatgtttataacc-cctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagag-aaaacaactgtttcagat 197  Q
    ||||| ||| ||| ||||||| ||||||||| ||||||| | ||||| | |||||||||| ||| |||| ||||||||||| |||| || ||||||| ||    
T  17732906 aatgtctattacctcctaattaatcaacatttctcaaaacacatgtaactcttgtatctacgatatgtggaagcaagagagaaaaaaaaatgtttcatat 17733005  T
Q  198 atttgtctaagttgccccgacatggctcgtatga 231  Q
    |||||||  |||||  |||||| |||||||||||    
T  17733006 atttgtcagagttg-tccgacacggctcgtatga 17733038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 40289281 - 40289050
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| |||||||||||| || |||||| | |||||||||||| || |||||||| ||||||||||||||  | |||||    ||||||||||||    
T  40289281 ttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaaactaaaaataacttaatcaattgta 40289182  T
Q  101 atgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatt 200  Q
    |||| || |||||||||||||| |||||| ||||||| |||||||   |||||||||||| | |||| ||||||||||||||  || ||||| |||||||    
T  40289181 atgtctacaacccctaattgattaacatttctcaaaacatatgtaaatcttgtatctatggtgtgtggaagcaagagagaaa--aaatgttttagatatt 40289084  T
Q  201 tgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    ||| | |||||  |||||||| |||||||||||||    
T  40289083 tgtttgagttg-tccgacatgactcgtatgagtgt 40289050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 31734528 - 31734703
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| ||||||||||||||| |||||| ||||||||||  || || |||||||| |||||||||||| || | |||||||||||||||| | ||    
T  31734528 ttatttcattagaaaaagttctaaaacaagatatcgtagtattt-tcctttatttattcatctactatcaaaagagctaaaaatgttataatcaactata 31734626  T
Q  101 atgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagaga 178  Q
    |||| ||| ||||| |  ||||||||||| ||||||| ||||||| | |||||||||| | | |||| ||||||||||    
T  31734627 atgtctattacccc-atgtgatcaacatttctcaaaacatatgtaactcttgtatctacggtatgtggaagcaagaga 31734703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 45612530 - 45612333
Alignment:
Q  40 tatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacccctaattgatcaacattcctc-aaaat 138  Q
    ||||||||| || |||||||| ||||||||||||||| | |||||| ||||||||| | |||||| ||||| |||| ||| ||||||||| ||| ||||     
T  45612530 tatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataatgtctataaacccttattaatcaacatttctcaaaaac 45612431  T
Q  139 atatgtagcacttgtatctatgatttgtgtaagcaagagag--aaaacaactgtttcagatatttgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    ||||||| | |||||||||||| | || | |||||||||||  |||| || ||||| |||||||||| | |||||  |||||| | |||||||||||||    
T  45612430 atatgtaactcttgtatctatggtgtgcggaagcaagagagaaaaaaaaattgttttagatatttgtttgagttg-tccgacacgactcgtatgagtgt 45612333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 3419971 - 3420042
Alignment:
Q  87 tataatcaattgtaatgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatcta 158  Q
    ||||||||| | |||| | |||||||||||||||||||||||| ||||||| ||||||| | ||||||||||    
T  3419971 tataatcaactataatatctataacccctaattgatcaacatttctcaaaacatatgtaactcttgtatcta 3420042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 180
Target Start/End: Original strand, 44507760 - 44507900
Alignment:
Q  41 atttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacccctaattgatc-aacattcctcaaaata 139  Q
    |||||||| || ||||| || || |||| ||||||| | |||||||| ||||  | | |||||| ||||| |||| ||||||| |||||| ||||| |||    
T  44507760 atttgacctttatttatccatcttctataaaaaaagataaaaatgttgtaattgactttaatgtctataatccctcattgatctaacatttctcaacata 44507859  T
Q  140 tatgtagcacttgtatctatgatttgtgtaagcaagagaga 180  Q
    ||| || | | ||| |||||| | |||| ||||||||||||    
T  44507860 tatttaactcatgtgtctatggtgtgtggaagcaagagaga 44507900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 21408989 - 21408750
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| |||||| ||||||||||||||| |||||||||||||| || |||||||| ||||||| ||||| ||| |||||||||||||||||||||    
T  21408989 ttatttcattagaaaaaattctaaaataagatatcgtagtatttgacctttatttattcatctactataaaaaaggttaaaaatgttataatcaattgta 21408890  T
Q  101 atgttt-ataacccctaattgatcaacattcctcaaa--------atatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtt 191  Q
    ||||||  || ||||||||||||||||||| ||||||        | ||||||| | |||||||||| | | |||| ||||||||||||||| || ||||    
T  21408889 atgtttgttaccccctaattgatcaacatttctcaaaacatatgtacatatgtaactcttgtatctaagttatgtggaagcaagagagaaaa-aaatgtt 21408791  T
Q  192 tcagatatttgtctaagttgccccgacatggctcgtatgagt 233  Q
    | |||||||||| | |||||  |||||| |||||||||||||    
T  21408790 ttagatatttgtttgagttg-tccgacacggctcgtatgagt 21408750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 43922072 - 43921863
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| ||||||||||||||| |||| | |||||||||||| | || |||||||| ||| ||||||||||| | |||||||||||||||||||||    
T  43922072 ttatttcattagaaaaagttctaaaacaagacatcgtagtatttgatctttatttattcatctaatatcaaaaaagctaaaaatgttataatcaattgta 43921973  T
Q  101 atgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatt 200  Q
    ||||  || | |||| ||||||||||||| ||||||| ||||||| | ||||||||||   | |||| ||||||||||||||| || || || |||||||    
T  43921972 atgtcaattaaccctgattgatcaacatttctcaaaacatatgtaactcttgtatctactgtatgtggaagcaagagagaaaa-aaatgctttagatatt 43921874  T
Q  201 tgtctaagttg 211  Q
    ||||| |||||    
T  43921873 tgtctgagttg 43921863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 11410716 - 11410949
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| ||||||||||||||| |||||| |||||||||| ||| || |||||||| ||||||||||||| | | ||| ||||||||||||   ||    
T  11410716 ttatttcattagaaaaagttctaaaagaagatatcgtagtatttaacctttatttattcatctactatcaaaaaggctaaaactgttataatcaacaata 11410815  T
Q  101 atgttta-taacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatat 199  Q
    || | || || ||||||||||||||||||| ||||||| ||||||| | |||||||||| | | |||| ||| ||||||||||| || |||||  |||||    
T  11410816 atatctattaccccctaattgatcaacatttctcaaaacatatgtaactcttgtatctacggtatgtggaagtaagagagaaaa-aaatgttttcgatat 11410914  T
Q  200 ttgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    |||  |||||||  | ||||||||||||||||||||    
T  11410915 ttgcataagttg-tctgacatggctcgtatgagtgt 11410949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 10516295 - 10516137
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||| ||| ||||||||||||| |  | ||    
T  10516295 ttatttcattagaaaaagttctaaaataagatatcgtagtatttgaccattatttattcaactcctatcaaaaaggttaaaaatgttataataagctata 10516196  T
Q  101 atgttta-taacccctaattgatcaacattcctcaaaatatatgtagcacttgtatcta 158  Q
    |||| || || |||||||||||| ||||||  | |||| ||||||| | ||||||||||    
T  10516195 atgtatattaccccctaattgattaacattttttaaaacatatgtaactcttgtatcta 10516137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 26565412 - 26565566
Alignment:
Q  80 aaaatgttataatcaattgtaatgtttataac-ccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagaga 178  Q
    ||||||||||||| || |||||||| ||| || |||||| ||||||||||| || |||| ||||||| | ||| |||||| ||| |||| ||||||||||    
T  26565412 aaaatgttataattaactgtaatgtctattactccctaaatgatcaacatttctaaaaacatatgtaactcttatatctaagatatgtggaagcaagaga 26565511  T
Q  179 gaaaacaactgtttcagatatttgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    ||||| || ||||| |||||||||||| |||||  |||||| |||||||||||||||    
T  26565512 gaaaa-aaatgttttagatatttgtctgagttg-tccgacacggctcgtatgagtgt 26565566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10657567 - 10657334
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||| ||| ||||||||||||||| |||||| ||||  |||||||| || |||||||| || || ||||||||||| |||||||||||||||  ||||    
T  10657567 ttattttattagaaaaagttctaaaacaagatatcgtataatttgacctttatttattcaactcct-tcaaaaaagttaaaaatgttataatcatatgta 10657469  T
Q  101 atgt-ttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatat 199  Q
    |||| || || || ||||||||||||||||  |||||| |||||||   |||||||||| | |   || ||| ||||||||||| || | ||| ||||||    
T  10657468 atgtattttagcctctaattgatcaacatttttcaaaacatatgtaaatcttgtatctacggtacatggaagtaagagagaaaaaaaatattttagatat 10657369  T
Q  200 ttgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    || | | |||||  | |||| |||||||||||||||    
T  10657368 ttatatgagttg-tctgacacggctcgtatgagtgt 10657334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 14218511 - 14218615
Alignment:
Q  80 aaaatgttataatcaattgtaatgtttataacccc-taattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagaga 178  Q
    |||||||||||||||| |||||||| ||| ||||| |||||||||||||||  |||||||||||||  | ||||| |||| | | |||| ||||||||||    
T  14218511 aaaatgttataatcaactgtaatgtctattaccccctaattgatcaacatttatcaaaatatatgtgactcttgtgtctacggtatgtggaagcaagaga 14218610  T
Q  179 gaaaa 183  Q
    |||||    
T  14218611 gaaaa 14218615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 27063785 - 27063931
Alignment:
Q  13 aaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacc 112  Q
    |||| ||||||||| |||||| | || ||| ||||| || |||||||| ||||| ||| ||||| | |||||||| |||| || |  ||| | ||||||     
T  27063785 aaaacgttctaaaacaagataccataatatatgacctttatttattcatctactgtcataaaagctaaaaatgttgtaattaacttaaatttctataact 27063884  T
Q  113 cctaa-ttgatcaacattcctcaaaatatatgtagcacttgtatcta 158  Q
    ||||| |||||||||||| ||||| ||||||||| | ||| ||||||    
T  27063885 cctaaattgatcaacatttctcaacatatatgtaactcttatatcta 27063931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 49860462 - 49860544
Alignment:
Q  13 aaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaa 95  Q
    |||||||||||||| ||||||  || |||||||||  || |||||| | |||||||||||| || | ||||| ||||||||||    
T  49860462 aaaaagttctaaaacaagatatagtggtatttgacatttatttatttatctactatcaaaagagctaaaaatcttataatcaa 49860544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 2227339 - 2227278
Alignment:
Q  12 gaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaa 73  Q
    |||||||||||| || |||||  | |||||||||||| || |||||||| ||||||||||||    
T  2227339 gaaaaagttctacaacaagatgtcatagtatttgacctttatttattcatctactatcaaaa 2227278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 32740918 - 32741090
Alignment:
Q  37 tagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacccctaattgatcaacattcctcaaa 136  Q
    |||||||||||| || |||||||| |||| |||||||||| | ||||||  ||||||||||||||||| ||||||||| |||||||||||||| | ||||    
T  32740918 tagtatttgacctttatttattcatctaccatcaaaaaagctaaaaatg--ataatcaattgtaatgtctataacccccaattgatcaacatttcacaaa 32741015  T
Q  137 atatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatttgtctaagttg 211  Q
    | ||||||| | |||||||||||| | |||| ||||||||||||||| || ||||| ||||||||| || |||||    
T  32741016 acatatgtaactcttgtatctatggtgtgtggaagcaagagagaaaaaaattgttttagatatttgcctgagttg 32741090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 48632712 - 48632480
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    ||||||||||  |||||||||||||| |||||| | |||||||||||| || |||||||  ||||||||||||||| | |||| ||| ||||||| | ||    
T  48632712 ttatttcattgaaaaaagttctaaaacaagataccatagtatttgacctttatttattcttctactatcaaaaaagctaaaaacgttgtaatcaacttta 48632613  T
Q  101 atgtttataacccc-taattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatat 199  Q
    || | ||||||||| ||||||||||||||| ||||| | ||||| | | |||||||||| | | |||  || ||  |||||||| || ||||||||| ||    
T  48632612 atttctataaccccgtaattgatcaacatttctcaacacatatgcaactcttgtatctacggtgtgtagaacca--agagaaaaaaaatgtttcagacat 48632515  T
Q  200 ttgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    |||| | |||||  | |||||||||||| |||||||    
T  48632514 ttgtttgagttg-tctgacatggctcgtgtgagtgt 48632480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 23431900 - 23431992
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatc 93  Q
    |||||||||| ||||||||||||||| || ||| |||||||||||||  |  |||||||| ||||||||||||||||| ||||||||||||||    
T  23431900 ttatttcattagaaaaagttctaaaacaaaatatcgtagtatttgacattcatttattcatctactatcaaaaaagttaaaaatgttataatc 23431992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 126323 - 126430
Alignment:
Q  39 gtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataa--cccctaattgatcaacattcctcaaa 136  Q
    |||||||||| || |||||||| ||||||| ||||| ||| |||||||||||||||| | |||||| |||||  ||||||||||||||||||| ||||||    
T  126323 gtatttgacctttatttattcatctactattaaaaa-gttaaaaatgttataatcaactttaatgtctataacccccctaattgatcaacatttctcaaa 126421  T
Q  137 atatatgta 145  Q
    | |||||||    
T  126422 acatatgta 126430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 3387700 - 3387821
Alignment:
Q  13 aaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacc 112  Q
    ||||||||||| || |||||||  |||||||||||| || |||||||| |||| ||| ||||| || |||| ||| ||||||| | |||||| |||||||    
T  3387700 aaaaagttctataacaagataaaatagtatttgacctttatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaactttaatgtctataacc 3387799  T
Q  113 cctaattgatcaacattcctca 134  Q
    | | ||||||||||||| ||||    
T  3387800 cttgattgatcaacatttctca 3387821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 18476539 - 18476634
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgacc-attgtttattcacctactatcaaaaaagtttaaaatgttataatcaa 95  Q
    |||||||||| ||||||||||||||  |||||| ||||||||||||||  || |||||||| ||||||||||||||| | ||||| || |||||||    
T  18476539 ttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctactatcaaaaaagctaaaaatattgtaatcaa 18476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 18488357 - 18488471
Alignment:
Q  116 aattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatatttgtctaagttgcccc 215  Q
    |||| ||||||||| ||||||| | ||||| | |||| ||||| ||| |||| ||||||||||||||| || ||||||| |||||||||  |||||  ||    
T  18488357 aattaatcaacatttctcaaaacacatgtaactcttggatctacgatatgtggaagcaagagagaaaaaaaatgtttcatatatttgtcagagttg-tcc 18488455  T
Q  216 gacatggctcgtatga 231  Q
    ||||||||||||||||    
T  18488456 gacatggctcgtatga 18488471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 3954983 - 3955117
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    ||||||||||  |||||||||||||||||||||   | |||||||||| || ||||| || |||||||| |||||| | |||| ||| ||||||| | ||    
T  3954983 ttatttcattaaaaaaagttctaaaataagatacgatcgtatttgacctttatttatccatctactatcgaaaaagctaaaaacgttgtaatcaacttta 3955082  T
Q  101 atgtttataacccctaattgatcaacattcctcaa 135  Q
    || | | ||||||||  |||||||||||| |||||    
T  3955083 atctctgtaaccccttgttgatcaacatttctcaa 3955117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 9149127 - 9148999
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| ||||||  | ||||| |||||| | |||||||| ||| || |||||| | ||||||||||||||| | |||||||||||  ||| | ||    
T  9149127 ttatttcattagaaaaaagtttaaaacaagatatcatagtattttacctttatttatttatctactatcaaaaaagctaaaaatgttatagccaacttta 9149028  T
Q  101 atgtttataacccctaattgatcaacatt 129  Q
    |||| ||||||| | |||||||| |||||    
T  9149027 atgtctataaccaccaattgatctacatt 9148999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 26576094 - 26576329
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||| ||||| |||||||||||| || |||||| | |||||||||||| || |||||||| ||||||||||| ||| | |||| | ||||||||| | ||    
T  26576094 ttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaataagctaaaaacgatataatcaactata 26576193  T
Q  101 atgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagca--agagagaaaacaactgtttcagata 198  Q
    |||| ||||||| ||||| |||||||||| ||||||| ||||||| | |||||||||||| | || | |||||  |||||||||| |  ||||| | |||    
T  26576194 atgtctataaccactaatcgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagagagaaaaaatttgttttaaata 26576293  T
Q  199 tttgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    ||||| | |||||  |||||| |||||||||||||||    
T  26576294 tttgtttgagttg-tccgacacggctcgtatgagtgt 26576329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 34409706 - 34409551
Alignment:
Q  6 tcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatca-aaaaagtttaaaatgttataatcaattgtaatgt 104  Q
    ||||| |||||||||||| || ||||||   |||||||||||| || |||||| | ||||  ||| |||||| | |||||| ||||||||| | ||||||    
T  34409706 tcattagaaaaagttctacaacaagatattatagtatttgacctttatttatttatctaccgtcagaaaaagctaaaaatgatataatcaactataatgt 34409607  T
Q  105 ttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatg 160  Q
     |||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||    
T  34409606 ctataacccctaattgatcaacatttctcaaaacatatgtaactcttgtatctatg 34409551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 9929664 - 9929778
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| |||||||||||| || |||||| | |||||||||||| || |||||||| ||||||||||||| | | |||||| ||| ||||| ||||    
T  9929664 ttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaatgctcaaaatgatatgatcaactgta 9929763  T
Q  101 atgtttataacccct 115  Q
    |||| ||||||||||    
T  9929764 atgtctataacccct 9929778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 13039011 - 13039116
Alignment:
Q  100 aatgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatat 199  Q
    ||||||||||||| |||||||||||||||| |||| || ||||||| | |||||||||||| | || | |||||||||| |||| || ||||| ||||||    
T  13039011 aatgtttataaccactaattgatcaacatttctcataacatatgtaactcttgtatctatggtgtgcggaagcaagagataaaaaaattgttttagatat 13039110  T
Q  200 ttgtct 205  Q
    ||||||    
T  13039111 ttgtct 13039116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 44650084 - 44649967
Alignment:
Q  13 aaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataa-c 111  Q
    ||||| || ||||| |||||| | ||| |||||||| || |||||||| ||||||||||||||||| |||||||| ||||||| | |||| | ||||| |    
T  44650084 aaaaaattataaaacaagataccatagaatttgacctttatttattcatctactatcaaaaaagttaaaaatgttgtaatcaactttaatttctataagc 44649985  T
Q  112 ccctaattgatcaacatt 129  Q
    ||||||||||||||||||    
T  44649984 ccctaattgatcaacatt 44649967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 9929778 - 9929864
Alignment:
Q  97 tgtaatgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaa 183  Q
    |||||||| ||||||||||| |||||||||||| ||||||| ||||||| | |||||||||||| | |||| |||||||| ||||||    
T  9929778 tgtaatgtctataacccctatttgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgtggaagcaagatagaaaa 9929864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 27004068 - 27004253
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagt---ttaaaatgttataatcaatt 97  Q
    ||||||||||  ||||||||||  || |||||| | |||||||||||| || |||||||| ||||| | ||||||     | |||||| ||||||||| |    
T  27004068 ttatttcattaaaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctactgtaaaaaaaaaaactaaaaatgatataatcaact 27004167  T
Q  98 gtaatgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaa 183  Q
     ||||||  |||||||||||||||||||||||  |||||| ||||  | | ||||||||||||   |||| |||||| ||||||||    
T  27004168 ataatgtacataacccctaattgatcaacatttttcaaaacatatacaactcttgtatctatggcatgtgaaagcaaaagagaaaa 27004253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 32200952 - 32200877
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaag 76  Q
    |||| ||||| |||||||||||| || |||||| | |||||||||||| || |||||||| |||||||||||||||    
T  32200952 ttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaag 32200877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 13037341 - 13037415
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaa 75  Q
    |||| |||||||||||||||||| || |||||| | |||||||||| | || |||||||| ||||||||||||||    
T  13037341 ttatgtcatttgaaaaagttctacaacaagatatcatagtatttgatctttatttattcatctactatcaaaaaa 13037415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 28421074 - 28421256
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||| ||||| ||||||||| || || |||||| | ||  |||||||| || |||||||| ||||||||||||||| | |||| | ||||||||| | ||    
T  28421074 ttatgtcattagaaaaagttttacaacaagatatcatatgatttgacctttatttattcatctactatcaaaaaagctaaaaacgatataatcaactata 28421173  T
Q  101 atgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaa 183  Q
    |||| ||||||| |||||||||||| ||| ||||||||||||||| | |||||||||||| | || | |||| ||||||||||    
T  28421174 atgtctataaccactaattgatcaagatttctcaaaatatatgtaactcttgtatctatggtgtgcggaagcgagagagaaaa 28421256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 1226089 - 1226323
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    ||||||||||  |||||||| ||||| |||||| |  ||||||||| | || |||||||| |||||||||||||  || |||||||| ||||||| | ||    
T  1226089 ttatttcattgaaaaaagttataaaacaagataccagagtatttgatctttatttattcatctactatcaaaaat-ttaaaaatgttgtaatcaacttta 1226187  T
Q  101 atgtttataaccc-ctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatat 199  Q
    || | ||||| || ||||||||| |||||| ||||| | |||| || | |||||||||| ||| |||| ||  |||||||| || || | ||||| ||||    
T  1226188 atttctataaacctctaattgattaacatttctcaacacatatttaactcttgtatctacgatgtgtggaataaagagagagaaaaaatatttcaaatat 1226287  T
Q  200 ttgtctaagttgccccgacatggctcgtatgagtgt 235  Q
    |||||| |||||   |||||||||||||||||||||    
T  1226288 ttgtctgagttgtttcgacatggctcgtatgagtgt 1226323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 44502336 - 44502468
Alignment:
Q  13 aaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacc 112  Q
    ||||||||||| || |||||| | || ||||||||| || |||||||| || |||||||||||||| |||||  ||||||||| | |||||| |||||||    
T  44502336 aaaaagttctacaacaagatatcatactatttgacctttatttattcatctgctatcaaaaaagttaaaaataatataatcaactataatgtctataacc 44502435  T
Q  113 cctaattgatcaacattcctcaaaatatatgta 145  Q
    ||||||  ||||||||| ||||||| |||||||    
T  44502436 cctaatcaatcaacatttctcaaaacatatgta 44502468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 15132085 - 15131915
Alignment:
Q  13 aaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacc 112  Q
    ||||||||||| |  |||||| | |||||||||| | || |||||| | |||||||| |||||| | |||||| ||||||||| | |||||| |||||||    
T  15132085 aaaaagttctacagcaagatatcatagtatttgatctttatttatttatctactatcgaaaaagctaaaaatgatataatcaactataatgtctataacc 15131986  T
Q  113 cctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaa 183  Q
    ||||||||||||| ||| || |||| ||||||| | | ||||||| || | ||   |||||||||||||||    
T  15131985 cctaattgatcaatatttctaaaaacatatgtaactcctgtatctctggtgtgcagaagcaagagagaaaa 15131915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 18603130 - 18602989
Alignment:
Q  70 aaaaaagtttaaaatgttataatcaattgtaatgtttataacccctaattgatcaacattcctcaaaatatatgtagcacttgtatc-tatgatttgtgt 168  Q
    ||||||| | |||||||||||||||||||||||||  ||   |||||||||||||||||| ||||||| ||||||| | |||||||| ||   | ||||     
T  18603130 aaaaaagctaaaaatgttataatcaattgtaatgtcaattcaccctaattgatcaacatttctcaaaacatatgtaactcttgtatcataccgtatgtgg 18603031  T
Q  169 aagcaagagagaaaacaactgtttcagatatttgtctaagttg 211  Q
    ||||||||||||||| || || || |||||||||||| |||||    
T  18603030 aagcaagagagaaaa-aaatgctttagatatttgtctgagttg 18602989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 18393668 - 18393552
Alignment:
Q  13 aaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacc 112  Q
    |||||||| || || |||||||  |||||||||||| || ||||| || |||||||||||||| || |||| ||| ||||||| | |||||| |||||||    
T  18393668 aaaaagttttataacaagataaaatagtatttgacctttatttatccatctactatcaaaaaatttaaaaacgttgtaatcaactttaatgtctataacc 18393569  T
Q  113 cctaattgatcaacatt 129  Q
    | | |||||||||||||    
T  18393568 cttgattgatcaacatt 18393552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 15850585 - 15850259
Alignment:
Q  1 ttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgta 100  Q
    |||||||||| ||||||||| ||||| |||||| |  ||||||||||  || |||||||| ||||||||||||||| | ||||||||||               
T  15850585 ttatttcattagaaaaagttataaaacaagatatcacagtatttgacatttatttattcatctactatcaaaaaagctaaaaatgttat----------- 15850497  T
Q  101 atgtttataacc-cctaattgatcaacattcctcaaaatatatgtagcacttgtatctatgatttgtgtaagcaagagagaaaacaactgtttcagatat 199  Q
    |||| ||||||| || | ||||||||||||  |||||| ||||||| | |||||||||| |   |||| ||||||||||||||| || | ||||||||||    
T  15850496 atgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagaaaa-aaatatttcagatat 15850398  T
Q  200 ttgtctaagttg-ccccgacatggctcgtatga-----------gtgtcagacaccggttttaggagtctcgaattaaaggaaaaacaactttatttagg 287  Q
    | |||| ||||| ||   ||| ||||| ||| |           ||||||||||||||| ||| |||| | ||||||||| |||||||| ||||||||||    
T  15850397 tcgtcttagttgtccgacacacggctcttataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttagg 15850298  T
Q  288 atatcgattttaattatccggcacgtatcgtacgagtgt 326  Q
    | | |||||||| || || |  |||| ||||||||||||    
T  15850297 acaccgattttagttgtctgatacgtgtcgtacgagtgt 15850259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 18602961 - 18602879
Alignment:
Q  232 gtgtcagacaccggttttaggagtctcgaattaaaggaaaaa-caactttatttaggatatcgattttaattatccggcacgt 313  Q
    ||||| ||||||||| |||||||| |||||| |||| ||||| ||| ||||||||||| | |||||||| || |||| |||||    
T  18602961 gtgtcggacaccggtcttaggagtgtcgaatcaaagaaaaaaacaattttatttaggacaccgattttagttgtccgacacgt 18602879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 12923 - 13046
Alignment:
Q  13 aaaaagttctaaaataagataacgtagtatttgaccattgtttattcacctactatcaaaaaagtttaaaatgttataatcaattgtaatgtttataacc 112  Q
    ||||||||| |||| |||||  | |||||||||||  || |||||||| ||||||||||||||| | ||||  || ||||||| | |||| | |||||||    
T  12923 aaaaagttcgaaaacaagatgtcctagtatttgacatttatttattcatctactatcaaaaaagctaaaaacattgtaatcaactttaatttctataacc 13022  T
Q  113 -cctaattgatcaacattcctcaa 135  Q
     |||||||||||||| || |||||    
T  13023 tcctaattgatcaacgtttctcaa 13046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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