View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_25 (Length: 464)
Name: NF13777_low_25
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 8996710 - 8997088
Alignment:
| Q |
18 |
ggaacctcccaaattcttacaatgtgtagcttaatcctccacgcatctttcccaggaacgatctcagacaaacaatcaaaggactttttcattctcactt |
117 |
Q |
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| T |
8996710 |
ggaacctcccaaattcttacaatgtgtagcttaatcctccacgcatctttcccaggaacgatctcagacaaacaatcaaaggactttttcattctcactt |
8996809 |
T |
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| Q |
118 |
caagatactattgtgaagatattgaagtaaattgaagtagccaaacacctatctatagcaatttcaaccagagaaaaacaatggcaattcggataaagac |
217 |
Q |
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| T |
8996810 |
caagatactattgtgaagatattgaagtaaattgaagtagtcaaacacctatttatagcaatttcaaccagaggaaaacaatggcaattcggataaagac |
8996909 |
T |
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| Q |
218 |
agagctgctgacacaaaggcaacttattcaacgtttcctgacagcactggcacaaaatctaccaaatttcaaacttctctgactacaaaatcaagattgg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8996910 |
agagctgctgacacaaaggcaacttattcaacgtttcctgacagcactggcacaaaatctaccaaatttcaaact--tctgactacaaaatcaagattgg |
8997007 |
T |
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| Q |
318 |
gccgcacttcatttttcaatggagattttgggcaaaattcaaactacctcgataccttgtggcagtgcccacagaattaga |
398 |
Q |
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| T |
8997008 |
gccgcacttcatttttcaatggagattttgggcaaaattcaaactagctcgataccttgtggcagtgcccacagaattaga |
8997088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 314
Target Start/End: Original strand, 30872781 - 30872904
Alignment:
| Q |
191 |
aaaaacaatggcaattcggataaagacagagctgctgacacaaaggcaacttattcaacgtttcctgacagcactggcacaaaatctaccaaatttcaaa |
290 |
Q |
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||||||||||| || | |||||| ||||| ||||||| |||| ||||||||||||||| |||||||||||||||| || |||||| ||| |||||| |
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| T |
30872781 |
aaaaacaatgggaacacagataaaaacagaactgctgaaacaatggcaacttattcaacctttcctgacagcactgataccgaatctaaaaaaattcaaa |
30872880 |
T |
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| Q |
291 |
cttctctgactacaaaatcaagat |
314 |
Q |
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||||||||| | | ||||||||| |
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| T |
30872881 |
gttctctgacaaaataatcaagat |
30872904 |
T |
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