View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_26 (Length: 456)

Name: NF13777_low_26
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_26
NF13777_low_26
[»] chr7 (29 HSPs)
chr7 (99-356)||(26899471-26899736)
chr7 (1-97)||(31513289-31513385)
chr7 (1-97)||(31408635-31408731)
chr7 (1-97)||(40236921-40237017)
chr7 (1-97)||(27535233-27535329)
chr7 (374-435)||(26899420-26899481)
chr7 (1-97)||(33384872-33384969)
chr7 (5-99)||(10573749-10573843)
chr7 (5-97)||(24001018-24001110)
chr7 (5-97)||(42538437-42538529)
chr7 (5-99)||(4638205-4638299)
chr7 (1-97)||(5194233-5194329)
chr7 (5-96)||(26898408-26898499)
chr7 (5-97)||(5810930-5811022)
chr7 (1-97)||(24280598-24280694)
chr7 (1-97)||(43317445-43317541)
chr7 (11-97)||(9216304-9216389)
chr7 (5-83)||(27393266-27393344)
chr7 (5-97)||(41861676-41861770)
chr7 (5-99)||(43343630-43343724)
chr7 (5-99)||(44326178-44326272)
chr7 (5-99)||(44416940-44417034)
chr7 (5-97)||(35069723-35069815)
chr7 (5-97)||(5015397-5015489)
chr7 (5-99)||(16180363-16180456)
chr7 (11-97)||(42972854-42972940)
chr7 (5-90)||(32029823-32029908)
chr7 (32-97)||(39998410-39998475)
chr7 (5-93)||(45326026-45326114)
[»] chr4 (39 HSPs)
chr4 (1-97)||(711962-712058)
chr4 (1-110)||(17619154-17619263)
chr4 (1-97)||(55272378-55272474)
chr4 (1-109)||(32728348-32728455)
chr4 (5-99)||(3756252-3756346)
chr4 (9-99)||(35037005-35037095)
chr4 (1-99)||(38851513-38851611)
chr4 (1-97)||(960872-960968)
chr4 (1-97)||(46827708-46827804)
chr4 (19-106)||(49229684-49229770)
chr4 (5-93)||(48435585-48435673)
chr4 (1-97)||(28988475-28988571)
chr4 (1-97)||(41878408-41878504)
chr4 (5-99)||(27893848-27893942)
chr4 (1-99)||(41327545-41327643)
chr4 (5-97)||(23035982-23036074)
chr4 (5-97)||(25051695-25051787)
chr4 (5-97)||(27864566-27864658)
chr4 (5-97)||(33703143-33703235)
chr4 (11-99)||(43514698-43514786)
chr4 (11-97)||(1771278-1771364)
chr4 (11-97)||(55966358-55966444)
chr4 (12-97)||(28982835-28982920)
chr4 (5-102)||(27550306-27550403)
chr4 (5-97)||(27316719-27316811)
chr4 (5-97)||(48463456-48463548)
chr4 (5-96)||(23204784-23204875)
chr4 (5-99)||(43949807-43949902)
chr4 (1-66)||(19879987-19880052)
chr4 (5-97)||(35017735-35017826)
chr4 (1-97)||(41847973-41848069)
chr4 (5-97)||(45490319-45490411)
chr4 (5-99)||(39631100-39631195)
chr4 (5-99)||(31680902-31680996)
chr4 (5-97)||(12496958-12497050)
chr4 (63-97)||(36004168-36004202)
chr4 (1-51)||(56215899-56215949)
chr4 (5-97)||(21687008-21687100)
chr4 (1-45)||(36004118-36004162)
[»] chr1 (24 HSPs)
chr1 (1-97)||(48119630-48119726)
chr1 (1-97)||(35003296-35003392)
chr1 (1-97)||(38335920-38336016)
chr1 (1-97)||(46168385-46168481)
chr1 (1-110)||(44112667-44112775)
chr1 (1-97)||(38113197-38113293)
chr1 (1-97)||(45427747-45427843)
chr1 (1-97)||(45639734-45639830)
chr1 (1-97)||(41065155-41065251)
chr1 (1-97)||(45705827-45705923)
chr1 (5-97)||(5489778-5489870)
chr1 (1-97)||(26585464-26585560)
chr1 (1-97)||(35000115-35000211)
chr1 (5-97)||(37814780-37814872)
chr1 (5-97)||(43571092-43571184)
chr1 (5-97)||(23989529-23989622)
chr1 (5-99)||(2497568-2497662)
chr1 (53-97)||(14427349-14427393)
chr1 (5-97)||(48498968-48499060)
chr1 (5-99)||(7447826-7447919)
chr1 (5-97)||(750311-750403)
chr1 (11-97)||(50448272-50448358)
chr1 (5-97)||(24769505-24769597)
chr1 (5-99)||(4401327-4401422)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-99)||(45721-45819)
[»] chr6 (18 HSPs)
chr6 (1-99)||(27441542-27441640)
chr6 (1-97)||(33242405-33242501)
chr6 (5-99)||(24203993-24204087)
chr6 (5-97)||(33253915-33254007)
chr6 (5-97)||(3213402-3213494)
chr6 (5-97)||(9698339-9698431)
chr6 (5-97)||(13743227-13743319)
chr6 (5-97)||(13748727-13748819)
chr6 (5-97)||(26466801-26466893)
chr6 (5-97)||(7273341-7273433)
chr6 (5-97)||(7292749-7292841)
chr6 (5-97)||(26670015-26670107)
chr6 (5-97)||(21293683-21293775)
chr6 (5-97)||(30014345-30014437)
chr6 (1-97)||(31109224-31109320)
chr6 (5-97)||(7367551-7367643)
chr6 (5-97)||(21279931-21280023)
chr6 (5-99)||(30735982-30736076)
[»] chr3 (26 HSPs)
chr3 (1-97)||(10457894-10457990)
chr3 (1-97)||(4190267-4190363)
chr3 (1-97)||(9434126-9434222)
chr3 (1-97)||(52627979-52628075)
chr3 (1-110)||(25996258-25996366)
chr3 (1-97)||(51757595-51757691)
chr3 (1-97)||(34791831-34791927)
chr3 (5-97)||(54237098-54237190)
chr3 (5-97)||(24688408-24688500)
chr3 (5-97)||(25413683-25413775)
chr3 (5-101)||(27748561-27748657)
chr3 (5-97)||(36150132-36150224)
chr3 (5-97)||(40480751-40480843)
chr3 (5-97)||(42394425-42394517)
chr3 (5-97)||(45126934-45127026)
chr3 (5-97)||(54246154-54246246)
chr3 (11-97)||(42100690-42100776)
chr3 (5-99)||(53581864-53581958)
chr3 (5-97)||(40808867-40808959)
chr3 (5-97)||(46941055-46941147)
chr3 (1-49)||(51249358-51249406)
chr3 (5-97)||(47191032-47191123)
chr3 (5-108)||(53273690-53273793)
chr3 (14-95)||(29558249-29558330)
chr3 (14-108)||(1078218-1078311)
chr3 (5-57)||(52629870-52629922)
[»] chr8 (28 HSPs)
chr8 (1-97)||(35181518-35181614)
chr8 (1-97)||(34304790-34304886)
chr8 (1-97)||(16603628-16603724)
chr8 (3-97)||(16358837-16358932)
chr8 (1-99)||(33629995-33630093)
chr8 (1-97)||(18066720-18066816)
chr8 (5-99)||(42295195-42295289)
chr8 (12-105)||(30912575-30912668)
chr8 (5-97)||(11582768-11582860)
chr8 (5-97)||(36743489-36743581)
chr8 (5-99)||(26125635-26125729)
chr8 (5-99)||(42699257-42699351)
chr8 (1-97)||(19386567-19386668)
chr8 (5-97)||(42197441-42197533)
chr8 (5-99)||(29800956-29801050)
chr8 (5-97)||(29705364-29705456)
chr8 (5-97)||(30660748-30660840)
chr8 (5-99)||(20148760-20148854)
chr8 (11-97)||(45397318-45397404)
chr8 (13-97)||(1375544-1375628)
chr8 (5-91)||(31384672-31384758)
chr8 (5-97)||(5754905-5754997)
chr8 (1-45)||(10678154-10678198)
chr8 (5-97)||(2165969-2166061)
chr8 (5-97)||(2546998-2547090)
chr8 (63-97)||(10678204-10678238)
chr8 (1-90)||(40528636-40528726)
chr8 (1-50)||(32328819-32328868)
[»] chr2 (29 HSPs)
chr2 (1-105)||(4299422-4299526)
chr2 (1-101)||(11825656-11825756)
chr2 (1-97)||(43114559-43114655)
chr2 (1-99)||(41281976-41282074)
chr2 (1-97)||(966836-966932)
chr2 (1-97)||(18491707-18491803)
chr2 (1-97)||(12415462-12415558)
chr2 (1-97)||(12427522-12427618)
chr2 (1-97)||(16803970-16804066)
chr2 (1-97)||(16843252-16843348)
chr2 (5-99)||(43490407-43490501)
chr2 (5-97)||(1750416-1750508)
chr2 (1-97)||(14285678-14285774)
chr2 (5-93)||(34895747-34895835)
chr2 (1-75)||(4451952-4452026)
chr2 (14-99)||(6518484-6518568)
chr2 (5-97)||(12302259-12302351)
chr2 (5-97)||(19047159-19047251)
chr2 (1-97)||(34817778-34817874)
chr2 (5-97)||(4764732-4764824)
chr2 (3-99)||(8896587-8896683)
chr2 (5-97)||(30838634-30838726)
chr2 (1-97)||(13780737-13780833)
chr2 (5-97)||(16096749-16096841)
chr2 (1-81)||(12531665-12531744)
chr2 (11-99)||(7070416-7070504)
chr2 (3-97)||(42026769-42026865)
chr2 (20-99)||(33229301-33229381)
chr2 (13-97)||(43335777-43335861)
[»] chr5 (13 HSPs)
chr5 (1-97)||(17208076-17208172)
chr5 (1-97)||(32473396-32473492)
chr5 (1-97)||(30622721-30622816)
chr5 (5-97)||(2614655-2614747)
chr5 (5-97)||(22512307-22512399)
chr5 (5-97)||(41334669-41334761)
chr5 (5-97)||(7617135-7617227)
chr5 (5-97)||(18033984-18034076)
chr5 (5-99)||(5256995-5257089)
chr5 (5-97)||(33801471-33801563)
chr5 (5-97)||(38470581-38470673)
chr5 (27-97)||(33855071-33855141)
chr5 (53-110)||(25915041-25915098)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-97)||(35458-35554)
[»] scaffold0038 (1 HSPs)
scaffold0038 (5-97)||(112657-112749)
[»] scaffold0385 (1 HSPs)
scaffold0385 (5-97)||(11253-11345)
[»] scaffold0187 (2 HSPs)
scaffold0187 (5-97)||(14194-14286)
scaffold0187 (5-97)||(24522-24614)
[»] scaffold0119 (1 HSPs)
scaffold0119 (5-97)||(687-779)
[»] scaffold0157 (1 HSPs)
scaffold0157 (5-97)||(23427-23519)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 8e-99; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 99 - 356
Target Start/End: Complemental strand, 26899736 - 26899471
Alignment:
Q  99 cctaaaataaattggatgaaatagtaagagatttcttgtagctctcataaaatgcagctgtgttaaatatcttaatggaagtagtttttgcacctgtgtt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||    
T  26899736 cctaaaataaattggatgaaatagtaagagatttcttgtagctctcataaaatgcagctgtttttaatatcttaatggaagtagtttttgcacttgtgtt 26899637  T
Q  199 acgcacgtcacacnnnnnnncacatcttgaagcacaaattattaaatattctaattgatttattcaatagtaacttgcggccgaaagtgtgatat---ag 295  Q
    |||||| ||||||       |||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||   ||    
T  26899636 acgcacttcacacaaaaaaacacatcttgaagcacaaattattaaatattctaattgattaattcatgagtaacttgcggccgaaagtgtgatatagaag 26899537  T
Q  296 aagagttgataa-----aatagagcgttgtgcaaatatttattacttacacatttattattctagt 356  Q
    ||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26899536 aagagttgataaaatataatagagcgttgtgcaaatatttattacttacacatttattattctagt 26899471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 31513385 - 31513289
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||||||    
T  31513385 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacatttt 31513289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 31408635 - 31408731
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||||||||||    
T  31408635 agagaaagtatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 31408731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 40237017 - 40236921
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||| ||||||||||||||||| |||||||||| ||| |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||    
T  40237017 agagaaaatatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacatttt 40236921  T

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Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 27535233 - 27535329
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||| ||||||||||||| |||||||||| || ||||  ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  27535233 agagaaagtatagttgtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 27535329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 26899481 - 26899420
Alignment:
Q  374 attattctagtgttatttacttgcaagatattgctttgatatttgatctatgtcttctctct 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26899481 attattctagtgttatttacttgcaagatattgctttgatatttgatctatgtcttctctct 26899420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 33384969 - 33384872
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaata-gggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||| ||||||||||||||||||||||| ||| |||||||| |||| ||||||| ||||||||||||||| | |||||||||||||||||    
T  33384969 agagaaagtatgtttgtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaacatttt 33384872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 10573843 - 10573749
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| |||||||||||||||||||||||||||| | |||| ||| | |||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  10573843 aaagtgtggttgtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttttc 10573749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 24001018 - 24001110
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| || |||| || ||||||||||||||||||||||||    
T  24001018 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 24001110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 42538437 - 42538529
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| || |||| || ||||||||||||||||||||||||    
T  42538437 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 42538529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 4638205 - 4638299
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||||||||||||||||| |||||||||||||| ||||  || | ||||||||| | |||||||| |||| |||||||||||||||||||||    
T  4638205 aaagtatggttgtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttttc 4638299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 5194233 - 5194329
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||| |||| || |||||||||||||||| ||||||||||||||  ||||| |||||||||  ||||||||| |||| |||||||||||||||||||    
T  5194233 agagtaagtgtgattgtgagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 5194329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 26898408 - 26898499
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 96  Q
    ||||| ||||||| ||||||| |||||||||||||| |||| ||| || |||||||| |||||||||| |||| ||||||||||||||||||    
T  26898408 aaagtgtggttgtaagatgaacttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

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Target: chr7; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 5810930 - 5811022
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| ||| |||||||||| ||||  |||| ||||||||| ||||||| || ||||||||| ||||||||||||||    
T  5810930 aaagtgtggttgtgagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacatttt 5811022  T

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Target: chr7; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24280598 - 24280694
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||| || |||||||||||||||||||||||||   || ||||| |  |||| |||||||||||||| ||||||||||||| ||||||||||    
T  24280598 agagaaagtgtgattgtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacatttt 24280694  T

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Target: chr7; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 43317541 - 43317445
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||| |||| || |||||||||||||||| |||||||||| ||| ||||||  ||||||||  ||||||||| |||| |||||||||||||||||||    
T  43317541 agagtaagtgtgattgtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 43317445  T

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Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 9216389 - 9216304
Alignment:
Q  11 tggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||| |||||||||||||  |||||||| | |||||||||||| | || || ||||||||||||||||||||||||    
T  9216389 tggttgtgagatgaacttaccaaaatatctctaatgcatgg-gtgtacaataggatataggaataaagggtgttcatgtaacatttt 9216304  T

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Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 27393266 - 27393344
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgt 83  Q
    ||||| ||||||||||||||| |||| ||||||||| |||| |||||||||||||||||| |||| || ||||||||||    
T  27393266 aaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagagtgtacaataggatgtaggaataaagggtgt 27393344  T

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Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 41861770 - 41861676
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatc-ct-taatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| |||||||||||| || ||||||||||||| || |||| ||||| ||||| ||| |||||||||| ||||||||||||||||||||||||    
T  41861770 aaagtgtggttgtgagataaacttaccaaaatatctctataatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacatttt 41861676  T

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Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 43343630 - 43343724
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| ||| |||||||||| |||| ||| | |||||||||||||||||  | |||| | |||||||||||||||||||    
T  43343630 aaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttc 43343724  T

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Target: chr7; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 44326272 - 44326178
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| ||||  ||   ||||||||| || ||||||| ||||||||||| ||||||||||||||    
T  44326272 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttc 44326178  T

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Target: chr7; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 44416940 - 44417034
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| ||| |||||||||| |||| ||| | |||||||||||||||||  | |||| | |||||||||||||||||||    
T  44416940 aaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttc 44417034  T

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Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 35069815 - 35069723
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| |||   |||||||||  |||||| || ||||| ||||||||||||||||||    
T  35069815 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacatttt 35069723  T

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Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 5015489 - 5015397
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| |||   ||||||||| | |||||  | ||||| ||||||||||||||||||    
T  5015489 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 5015397  T

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Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 16180363 - 16180456
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||||||||||||||||   |||| | | | ||||||||| ||||||| || |||| |||||| ||||||||||||||    
T  16180363 aaagtgtggttgtgagatgaatttaccaaaatatttataatacgtggggtgtacaat-gggtgtaggaataaatggtgttgatgtaacatttttc 16180456  T

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Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 42972940 - 42972854
Alignment:
Q  11 tggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||| |||||||||||||| |||| |||   ||||||||| | ||||| || |||||| |||||| ||||||||||    
T  42972940 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacatttt 42972854  T

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Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 32029823 - 32029908
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgta 90  Q
    ||||| ||||||| |||||||||||||||||||||| |||| ||| | ||||||||| ||||||| || ||||  ||||| |||||    
T  32029823 aaagtgtggttgttagatgaatttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaaaagtgtttatgta 32029908  T

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Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 39998475 - 39998410
Alignment:
Q  32 aaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||| |||| ||| | |||||||||||| ||||||||||||  ||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacatttt 39998410  T

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Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 45326114 - 45326026
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaaca 93  Q
    ||||| || |||||||||||| |||||||||||||| ||||  || | |||||||||  | ||||||| |||| |||||| ||||||||    
T  45326114 aaagtgtgattgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaaca 45326026  T

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Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 712058 - 711962
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  712058 agagaaagtatgtttgtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 711962  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 17619154 - 17619263
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |     
T  17619154 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttcca 17619253  T
Q  101 taaaataaat 110  Q
    ||||| ||||    
T  17619254 taaaagaaat 17619263  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 55272378 - 55272474
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||    
T  55272378 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacatttt 55272474  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 32728455 - 32728348
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcc 100  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  32728455 agagaaagtatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaaca-ttttcc 32728357  T
Q  101 taaaataaa 109  Q
    |||||||||    
T  32728356 taaaataaa 32728348  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 3756252 - 3756346
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  3756252 aaagtatgattgtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 3756346  T

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Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 35037095 - 35037005
Alignment:
Q  9 tatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  35037095 tatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttttc 35037005  T

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Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38851611 - 38851513
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||| || | |||||||||||||| | |||||||||||||||||    
T  38851611 agagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaacatttttc 38851513  T

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Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 960872 - 960968
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||| | || | |||||||||||||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  960872 agagaaagtacgattataagatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 960968  T

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Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 46827708 - 46827804
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||| |||| ||||||||| ||||||||||||  | |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  46827708 agagaaaatatgtttgtgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 46827804  T

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Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 49229684 - 49229770
Alignment:
Q  19 agatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcctaaaat 106  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataaca-ttttcctaaaat 49229770  T

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Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 48435585 - 48435673
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaaca 93  Q
    |||||||| |||||||||||||||||||| || ||| |||||||| | |||||||||||||||| |||||||| |||||||||||||||    
T  48435585 aaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaaca 48435673  T

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Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28988571 - 28988475
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||| ||||| ||||||||||||| |||||| ||| || ||||| | |||||||||  ||||||||| ||||||||||||||||||||||||    
T  28988571 agagaaagtgtggttatgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacatttt 28988475  T

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Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 41878504 - 41878408
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||| || ||||||||||||||| ||| |||||||||| ||||| |||| |||||||||  ||||||||| ||||| ||||||||||||||||||    
T  41878504 agagaaggtttggttgtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacatttt 41878408  T

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Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 27893848 - 27893942
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||||||| || ||||||| |||| |||||| ||||||||||||||    
T  27893848 aaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 27893942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 41327545 - 41327643
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||||| ||| |||||||||||||||||||||| ||| || ||||||  ||||||||| |||||| ||| ||||||||||  ||||||||||||||    
T  41327545 agagaaagtgtggatgtgagatgaatttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttttc 41327643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 23036074 - 23035982
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||| ||||||||| ||||  |||| ||||||||||||||||| || ||||||  ||||||||||||||||    
T  23036074 aaagtgtggttgtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacatttt 23035982  T

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Target: chr4; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 25051787 - 25051695
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| || |||||||||||| |||||||||||||| |||| ||||| ||||||||| ||||||| || ||||| |||||||||| |||||||    
T  25051787 aaagtgtgattgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacatttt 25051695  T

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Target: chr4; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 27864658 - 27864566
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||||||| || ||||||| |||| |||||| ||||||||||||    
T  27864658 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27864566  T

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Target: chr4; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 33703235 - 33703143
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | |||||||||| | ||||  | ||||||||||||||||||||||||    
T  33703235 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 33703143  T

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Target: chr4; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 43514698 - 43514786
Alignment:
Q  11 tggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||||||||||| ||||||||||| || |||| |||  |||||||||| | ||||| || ||||||||||||||||||||||||||    
T  43514698 tggttgtgagatgaacttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttttc 43514786  T

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Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 1771278 - 1771364
Alignment:
Q  11 tggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||| ||| |||||||||  |||| ||| | ||||||||| ||||||| || ||||||||||||||||||||||||    
T  1771278 tggttgtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1771364  T

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Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 55966358 - 55966444
Alignment:
Q  11 tggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||| |||||||||||||| |||| ||| |  |||||||| || ||||||| ||||||||||| ||||||||||||    
T  55966358 tggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 55966444  T

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Target: chr4; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 28982835 - 28982920
Alignment:
Q  12 ggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||||| |||||||||||||| ||||  || |  ||||||||||||||||  | ||||||||||||||||||||||||    
T  28982835 ggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacatttt 28982920  T

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Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 27550403 - 27550306
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttccta 102  Q
    ||||| ||||||| ||||||| |||||||||||||| |||| |||   ||||||||| | |||||  | |||||||||||||||||||||||| ||||    
T  27550403 aaagtgtggttgtaagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcccta 27550306  T

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Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 27316719 - 27316811
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||| ||||||||| ||||||||||||||||||| ||| | ||||| |||  |||||| || |||||||||||| | |||||||||    
T  27316719 aaagtgtggttatgagatgaacttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacatttt 27316811  T

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Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 48463456 - 48463548
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||| |  ||||||||    ||||||| |||| |||||| ||||||||||||    
T  48463456 aaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacatttt 48463548  T

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Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 23204784 - 23204875
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 96  Q
    ||||| ||||||||| ||||| |||| ||||||||| |||| |||||  |||||||| || |||| || ||||| |||||||||||||||||    
T  23204784 aaagtgtggttgtgacatgaacttacaaaaatatccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

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Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 43949807 - 43949902
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | |||||||||  |||| | | || |||||||||||||||| ||||||||    
T  43949807 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcatttttc 43949902  T

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Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 19880052 - 19879987
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggt 66  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||  || | ||||||||||||||    
T  19880052 agagaaagtatgattgtgagatgaatttaccaaaatgtccataatatatggggtgtacaatagggt 19879987  T

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Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 35017826 - 35017735
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| | || ||| | |||||||||  | | || || ||||||||||||||||||||||||    
T  35017826 aaagtgtggttgtgagatgaacttaccaaaatatccct-atacatggggtgtacaatgagatataggaataaagggtgttcatgtaacatttt 35017735  T

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Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 41848069 - 41847973
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||| |||||||| ||||||||| ||||||| ||  |||||||| | |||||||||  ||||| |||  ||||| ||||| |||||||||||    
T  41848069 agagaaagtgtggttgtgcgatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacatttt 41847973  T

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Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 45490319 - 45490411
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| |||||||||||||||||||| ||| ||||| |||| |||   ||||||||| || ||||| | ||||  ||||||||||||||||||    
T  45490319 aaagtgtggttgtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacatttt 45490411  T

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Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 39631195 - 39631100
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| |||| |||   |||||||||  |||||| | || |||||| ||||||||| ||||||||    
T  39631195 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcatttttc 39631100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 31680996 - 31680902
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| ||||  |  | ||||||||| |  ||||||| |||| |||||| | ||||||||||||    
T  31680996 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatacggggtgtacaatggaatgtatgaataaatggtgtttacgtaacatttttc 31680902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 12497050 - 12496958
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| || |||| ||||||| |||||||||||||  |||| ||| |  |||||||| | ||||| || |||||||||||||| |||||||||    
T  12497050 aaagtgtgattgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacatttt 12496958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 36004168 - 36004202
Alignment:
Q  63 gggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||| |||||||||||||||    
T  36004168 gggtgtatgattaaagggtattcatgtaacatttt 36004202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 56215899 - 56215949
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatag 51  Q
    ||||||||| |||||||||||| ||||| ||||||||||  ||||||||||    
T  56215899 agagaaagtgtggttgtgagataaattttccaaaatatcgctaatgcatag 56215949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 21687100 - 21687008
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||| ||||||||| |||| |||||||   |||| ||||   |||| ||| |||||||  | |||||| |||||||||||||||||    
T  21687100 aaagtatggttatgagatgaacttactaaaatatttctaatacataagatgtataatggggtgtaaaaataaaggatgttcatgtaacatttt 21687008  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36004118 - 36004162
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaat 45  Q
    |||||||||||||||||||||| |||||| |||||| ||| ||||    
T  36004118 agagaaagtatggttgtgagataaatttatcaaaatgtccctaat 36004162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 48119726 - 48119630
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  48119726 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 48119630  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35003392 - 35003296
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||    
T  35003392 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 35003296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 38336016 - 38335920
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||    
T  38336016 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 38335920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 46168481 - 46168385
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||    
T  46168481 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacatttt 46168385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 44112775 - 44112667
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcc 100  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44112775 agagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaaca-ttttcc 44112677  T
Q  101 taaaataaat 110  Q
    | ||||||||    
T  44112676 ttaaataaat 44112667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38113197 - 38113293
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||| ||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||    
T  38113197 agagtaagtatggttgtgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacatttt 38113293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 45427747 - 45427843
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  45427747 agagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacatttt 45427843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 45639734 - 45639830
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||| ||||||||||||||||||    
T  45639734 agagaaagtatgattgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacatttt 45639830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 41065251 - 41065155
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| ||||||||||  || |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||    
T  41065251 agagaaagtatggttgtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacatttt 41065155  T

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Target: chr1; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 45705923 - 45705827
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||  |||||||||||||||||||||| |||||||||    
T  45705923 agagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataacatttt 45705827  T

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Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 5489870 - 5489778
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| || |||| || ||||||||||||||||||||||||    
T  5489870 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 5489778  T

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Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 26585560 - 26585464
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||||||| | ||||||||||  ||||||||||||||  ||||||| |||||||||    
T  26585560 agagaaagtatgattgcgagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaacatttt 26585464  T

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Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 35000115 - 35000211
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||||||||||||| |||||| |||||| ||| |||| |||  ||| |||||||| ||||||||||||| |||||||||||||||||||    
T  35000115 agagaaagtatggttgtgagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaacatttt 35000211  T

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Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 37814872 - 37814780
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||| ||||||||||||||||||||||||| ||| | |||||||||  | ||||||| ||||||||||| ||||||||||||    
T  37814872 aaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 37814780  T

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Target: chr1; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 43571092 - 43571184
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | |||||||||  |||||| || ||||||||||||||||||||||||    
T  43571092 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 43571184  T

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Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 23989529 - 23989622
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 97  Q
    ||||| |||||||||||| ||||||||||||||||| |||| ||||| || |||||| | ||||||| || |||||||||||||||||||||||    
T  23989529 aaagtgtggttgtgagataaatttaccaaaatatccctaatacatagggtatacaattgagtgtatgaataaaagggtgttcatgtaacatttt 23989622  T

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Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 2497568 - 2497662
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||||||||  || | ||||||||| |  ||||||| |||| |||||| ||||||||||||||    
T  2497568 aaagtgtggttgtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttttc 2497662  T

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Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 14427393 - 14427349
Alignment:
Q  53 gtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14427393 gtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 14427349  T

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Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 48498968 - 48499060
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| |||   ||||||||| | |||||  | ||||| ||||||||||||||||||    
T  48498968 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 48499060  T

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Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 7447919 - 7447826
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| ||| |||||||||  |||| ||| | ||||||||| || |||| || |||||| |||||||||||||||||||    
T  7447919 aaagtgtggttgtgagatgaacttatcaaaatatctgtaatacatgg-gtgtacaatgggatgtaggaataaaggatgttcatgtaacatttttc 7447826  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 750311 - 750403
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||| ||||||||||||| |||||||||| | || ||| | ||||||||| ||||||| ||   ||||||||||| ||||||||||    
T  750311 aaagtgtggttttgagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacatttt 750403  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 50448272 - 50448358
Alignment:
Q  11 tggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||| ||||||| |||| ||||||||| |||| ||||  ||||||||| | |||||  | ||||| ||||||||||||||||||    
T  50448272 tggttgtaagatgaacttacaaaaatatccctaatacataaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 50448358  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 24769505 - 24769597
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||| | ||| |||||||||||||| |||| ||| | ||||||||| | |||||  | |||| |||||||||| ||||||||    
T  24769505 aaagtgtggttgtgataagaacttaccaaaatatccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacatttt 24769597  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 4401422 - 4401327
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||  |||| ||| | |||||||||   ||||| | || |||| ||||||||||| ||||||||    
T  4401422 aaagtgtggttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcatttttc 4401327  T

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Target: scaffold0003 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 45721 - 45819
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  45721 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 45819  T

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Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 27441640 - 27441542
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  27441640 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 27441542  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 33242501 - 33242405
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| ||| | |||||||||| |||||||||||||| |||||||||||||||||||    
T  33242501 agagaaagtatgtttgtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacatttt 33242405  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 24203993 - 24204087
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||| || |||| |||||||||||||||||||||    
T  24203993 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttttc 24204087  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 33254007 - 33253915
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||| |||||||||||||||||||| || ||| |||||||| | |||||||||||||||| |||||||| |||||||||||||||||||    
T  33254007 aaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacatttt 33253915  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 3213494 - 3213402
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||  | ||||||| ||||||||||| ||||||||||||    
T  3213494 aaagtatggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 3213402  T

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Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 9698339 - 9698431
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| || |||| || ||||||||||||||||||||||||    
T  9698339 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 9698431  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 13743227 - 13743319
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||||||| || ||||||| |||| |||||||||||||||||||    
T  13743227 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13743319  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 13748727 - 13748819
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||||||| || ||||||| |||| |||||||||||||||||||    
T  13748727 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13748819  T

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Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 26466893 - 26466801
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| ||||||||||| || |||| ||| ||||||||||| ||||||| || ||||||||||| ||||||||||||    
T  26466893 aaagtgtggttgtgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacatttt 26466801  T

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Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 7273341 - 7273433
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| || |||||||||||| |||||||||||||  |||| ||| | |||||||||| |||||| || ||||||||||||||||||||||||    
T  7273341 aaagtgtgattgtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacatttt 7273433  T

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Target: chr6; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 7292841 - 7292749
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||| |||  ||||||||| |||| ||||||| |||||||||||    
T  7292841 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacatttt 7292749  T

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Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 26670015 - 26670107
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| |||   |||||||||  |||||| || ||||||||||||||||||||||||    
T  26670015 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 26670107  T

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Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 21293683 - 21293775
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||| ||||||||||||||||||||||||| ||| | ||||||| |    ||||||| ||||||||||| ||||||||||||    
T  21293683 aaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacatttt 21293775  T

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Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 30014437 - 30014345
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||| |||||||||||| | |||| ||| |  |||| ||| || |||| || ||||||||||||||||||||||||    
T  30014437 aaagtatggttgtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacatttt 30014345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 31109224 - 31109320
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||| | |||| || || |||||||| |||||||||| || ||||| | ||||| ||| || ||||||||||||||||||||||||||||||||    
T  31109224 agagaaaatgtggtcgtaagttgaatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaacatttt 31109320  T

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Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 7367643 - 7367551
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| |  ||||||||  ||||||||| |||| | ||||||| |||||||||    
T  7367643 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacatttt 7367551  T

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Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 21280023 - 21279931
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| |||||||||||||||||||||||||||||| |||| ||| |  ||| |||| |  ||||  | ||||||||||||||||||||||||    
T  21280023 aaagtgtggttgtgagatgaatttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacatttt 21279931  T

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Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 30736076 - 30735982
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| || |||||||||||| |||||||||||||  |||| |||   ||||||||| ||||||| || ||||  ||||||||||||||||||||    
T  30736076 aaagtgtgattgtgagatgaacttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttttc 30735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10457894 - 10457990
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  10457894 agagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacatttt 10457990  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 4190267 - 4190363
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  4190267 agagaaagtatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 4190363  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9434222 - 9434126
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  9434222 agagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 9434126  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 52627979 - 52628075
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||   |||||||||||| ||||||||||||||||||||| ||||||||||    
T  52627979 agagaaagtatgattgtgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaacatttt 52628075  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25996366 - 25996258
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcc 100  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||  || | |||||||||| | |||||||||||||||||||||||||||| ||||||    
T  25996366 agagaaaatatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaaca-ttttcc 25996268  T
Q  101 taaaataaat 110  Q
    |||| |||||    
T  25996267 taaattaaat 25996258  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 51757691 - 51757595
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| |||| ||||| ||| ||||||||   |||||||||||||||||||||||||||||||| |||||| |||||    
T  51757691 agagaaagtatggttgtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaatatttt 51757595  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 34791927 - 34791831
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| |||  ||||| ||| ||||||||   || ||||||| ||||||||||||||||||||||||||||||||||    
T  34791927 agagaaagtatggttgtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacatttt 34791831  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 54237190 - 54237098
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| || |||| || ||||||||||||||||||||||||    
T  54237190 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 54237098  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 24688408 - 24688500
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| | |||||  | ||||||||||||||||||||||||    
T  24688408 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacatttt 24688500  T

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Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 25413775 - 25413683
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||| ||||||||| |||| ||||  ||||||||| ||||||| || ||||||||||||||||||||||||    
T  25413775 aaagtgtggttgtgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 25413683  T

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Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 27748657 - 27748561
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcct 101  Q
    ||||||| ||||||||||||| |||||||||||||| |||| ||||  ||||| |||  ||||||||| |||| |||||||||||||||||||||||    
T  27748657 aaagtattgttgtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttttcct 27748561  T

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Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 36150224 - 36150132
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| | || ||||| ||||| ||| |||||||||| |||||||| |||||||||||||||    
T  36150224 aaagtgtggttgtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacatttt 36150132  T

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Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 40480843 - 40480751
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| |||||  |||||||| |||  ||||| ||||||||||||||||||||||||    
T  40480843 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacatttt 40480751  T

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Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 42394425 - 42394517
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| |  |||| || ||||||||||||||||||||||||    
T  42394425 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 42394517  T

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Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 45126934 - 45127026
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||||||| || ||||||| ||||||||||| ||||||||||||    
T  45126934 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 45127026  T

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Target: chr3; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 54246154 - 54246246
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||| ||||||||  |||| ||||| ||||||||| ||||||| || ||||||||||||||||||||||||    
T  54246154 aaagtgtggttgtgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 54246246  T

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Target: chr3; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 42100776 - 42100690
Alignment:
Q  11 tggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||| |||||||||||||| |||| ||| | |||||||||  |||||| || ||||||||||||||||||||||||    
T  42100776 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42100690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 53581864 - 53581958
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| ||| |||||||||| |||| |||||  |||||||| | |||||||| ||||| ||||||||||||||||||||    
T  53581864 aaagtgtggttgtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttttc 53581958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 40808959 - 40808867
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||||||| ||||||| || |||| |||||| ||||||||||||    
T  40808959 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacatttt 40808867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 46941147 - 46941055
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | |||||||||  | |||| || ||||||||||||||||||||||||    
T  46941147 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacatttt 46941055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 51249406 - 51249358
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcat 49  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51249406 agagaaagtgtggttgtgagatgaatttaccaaaatatccttaatgcat 51249358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 47191032 - 47191123
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| ||| |||||||||  |||| ||| | |||||||||  |||||| || ||||||||||||||||||||||||    
T  47191032 aaagtgtggttgtgagatgaacttatcaaaatatctctaatacatgg-gtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 47191123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 53273690 - 53273793
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcctaaa 104  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||| |  ||||||||  ||| || || |||| | ||||||| ||||||||| | ||||    
T  53273690 aaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttccttaaa 53273789  T
Q  105 ataa 108  Q
    ||||    
T  53273790 ataa 53273793  T

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Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 29558249 - 29558330
Alignment:
Q  14 ttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 95  Q
    |||||||||||||||||||| |||| | ||||  |||| |||||||||  | ||||||| |||||||||||||| |||||||    
T  29558249 ttgtgagatgaatttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 1078311 - 1078218
Alignment:
Q  14 ttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcctaaaataa 108  Q
    ||||||||||||  ||| |||||||||| ||| |||   |||||||||  |||| | || |||||||||||||||||||||||||| ||||||||    
T  1078311 ttgtgagatgaacctacaaaaatatcct-aatacattaggtgtacaatgaggtgcaggaataaagggtgttcatgtaacatttttcataaaataa 1078218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 52629922 - 52629870
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgta 57  Q
    ||||| ||||||||||||||| |||| |||||||||||||| ||||| |||||    
T  52629922 aaagtgtggttgtgagatgaacttacaaaaatatccttaatacatagggtgta 52629870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35181614 - 35181518
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  35181614 agagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 35181518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 34304886 - 34304790
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||||    
T  34304886 agagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacatttt 34304790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 16603628 - 16603724
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||| ||||||||||||||||||||||||||||||| || ||||||||| | ||||| |||| |||||||||||||||||||| |||||||||||||    
T  16603628 agagtaagtatggttgtgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacatttt 16603724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 16358837 - 16358932
Alignment:
Q  3 agaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttc-atgtaacatttt 97  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| |  |||||||||||||||||||||||||||| ||| ||||||||||||    
T  16358837 agaaagtatggttgtgagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaacatttt 16358932  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 33629995 - 33630093
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||||||| ||||||||||||| |||| ||||| ||| |||||||||| |||||||||  |||||||||||||||||||||| |||||||||||||    
T  33629995 agagaaagtatagttgtgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttttc 33630093  T

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Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 18066720 - 18066816
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| |||| ||||||||| |||| ||| |  ||||||||||  ||||||||||||||||||||||||||||||||    
T  18066720 agagaaagtatggttgtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacatttt 18066816  T

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Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 42295289 - 42295195
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| |||||||||||  |||||| || ||||||||||||||||||||||||||    
T  42295289 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 42295195  T

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Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 30912575 - 30912668
Alignment:
Q  12 ggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcctaaaa 105  Q
    |||||||||||||| ||||||||||| || |||| |||  |||||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  30912575 ggttgtgagatgaacttaccaaaatacccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttcctaaaa 30912668  T

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Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 11582860 - 11582768
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| || |||| || ||||||||||||||||||||||||    
T  11582860 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 11582768  T

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Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 36743489 - 36743581
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| || |||| || ||||||||||||||||||||||||    
T  36743489 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 36743581  T

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Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 26125729 - 26125635
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| |  ||||||| ||||||||||| ||||||||||||||    
T  26125729 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttttc 26125635  T

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Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 42699351 - 42699257
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||| ||||||||| |||| ||||  ||||||||| ||||||| || ||||||||||||||||||||||||||    
T  42699351 aaagtgtggttgtgagatgaacttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttc 42699257  T

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Target: chr8; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 19386567 - 19386668
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcat-----agagtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 95  Q
    ||||||||||| ||||||||||||||||| ||||| || ||||||||||     |||  ||| |||||||||||||||||||||||||||||||||||||    
T  19386567 agagaaagtatagttgtgagatgaatttatcaaaacattcttaatgcatgaaagagaaagtataatagggtgtatgattaaagggtgttcatgtaacatt 19386666  T
Q  96 tt 97  Q
    ||    
T  19386667 tt 19386668  T

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Target: chr8; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 42197441 - 42197533
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| |||| |||| ||||||| || |||| |||||||||||||||||||    
T  42197441 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacatttt 42197533  T

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Target: chr8; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 29800956 - 29801050
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||||||| || ||||||| |||| |||||| ||||||||||||||    
T  29800956 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 29801050  T

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Target: chr8; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 29705456 - 29705364
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| ||| |||||||||| |||| ||| | ||||||||| |||||||  | ||||||||||||||||||||||||    
T  29705456 aaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 29705364  T

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Target: chr8; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 30660748 - 30660840
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||| ||||||| |||||||||||||| |||| ||||| ||||||||| || ||||  | ||||||||||||||||||||||||    
T  30660748 aaagtgtggttgtaagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacatttt 30660840  T

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Target: chr8; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 20148854 - 20148760
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| ||||  ||   ||||||||| || ||||||| ||||||||||| ||||||||||||||    
T  20148854 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttc 20148760  T

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Target: chr8; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 45397404 - 45397318
Alignment:
Q  11 tggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||| |||| ||||||||| |||| ||||| ||||| ||| ||||||| || ||||||||||||| ||||||||||    
T  45397404 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacatttt 45397318  T

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Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 1375628 - 1375544
Alignment:
Q  13 gttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||| ||||||||||||||||| ||||  || | ||||||||| |||||||||| |||| ||||||||||||| |||||    
T  1375628 gttgtgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaatttt 1375544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 31384758 - 31384672
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaa 91  Q
    ||||| ||||||||||||||| |||||||||||| | |||| ||| | |||||||||||  |||| || ||||||||||||||||||    
T  31384758 aaagtgtggttgtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 5754997 - 5754905
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| ||||  || |  |||||||| || |||| || |||| |||||||||||||||||||    
T  5754997 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacatttt 5754905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10678154 - 10678198
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaat 45  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  10678154 agagaaagtatggttgtgagatgaatttaccaaaatgtccttaat 10678198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 2165969 - 2166061
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||| ||||||||| |||||||||||||  |||| ||| | || |||||| ||||||| || |||| ||||||||||||| |||||    
T  2165969 aaagtgtggttatgagatgaacttaccaaaatatctctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatatttt 2166061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 2547090 - 2546998
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||| ||||||||| |||| |||   ||||||||| | |||||  | ||||| ||||||||||||||||||    
T  2547090 aaagtgtggttgtgagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 2546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 10678204 - 10678238
Alignment:
Q  63 gggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||| |||||||||||||||    
T  10678204 gggtgtatgattaaagggtattcatgtaacatttt 10678238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 40528636 - 40528726
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatg-attaaagggtgttcatgta 90  Q
    ||||||||| |||||||||||| |||||| |||||| ||| ||||  || | ||||||||| |||| | || || ||||||||||||||||    
T  40528636 agagaaagtgtggttgtgagataaatttatcaaaatgtccctaatatatggggtgtacaatggggtttgtgaataaaagggtgttcatgta 40528726  T

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Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32328819 - 32328868
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcata 50  Q
    ||||||||||| |||||||||| || |||||||||||| | |||||||||    
T  32328819 agagaaagtatagttgtgagataaacttaccaaaatattcctaatgcata 32328868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4299422 - 4299526
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcc 100  Q
    |||| ||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||     
T  4299422 agagtaagtatgattgtgagatgaatttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataacatttttcg 4299521  T
Q  101 taaaa 105  Q
    |||||    
T  4299522 taaaa 4299526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11825656 - 11825756
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcc 100  Q
    |||||||||||| |||||||||||| |||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11825656 agagaaagtatgattgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcc 11825755  T
Q  101 t 101  Q
    |    
T  11825756 t 11825756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 43114655 - 43114559
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  43114655 agagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 43114559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 41281976 - 41282074
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||||||||||||||||||||| ||| |||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  41281976 agagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 41282074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 966836 - 966932
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||| ||||||||||||||||||||||  | |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  966836 agagaaagtatgtttgtgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 966932  T

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Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 18491803 - 18491707
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||| ||||||||||||||||||||||||||||||| | ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  18491803 agagtaagtatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 18491707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12415462 - 12415558
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||||||||||||| || |||||||||| ||| |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||    
T  12415462 agagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 12415558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12427522 - 12427618
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||||||||||||| || |||||||||| ||| |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||    
T  12427522 agagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 12427618  T

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Target: chr2; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16804066 - 16803970
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| ||| |||||| ||| |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  16804066 agagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 16803970  T

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Target: chr2; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16843348 - 16843252
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| ||| |||||| ||| |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  16843348 agagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 16843252  T

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Target: chr2; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 43490407 - 43490501
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||| ||||||||| |||||||||||||| |||| ||||||||||||||| || |||| || ||||||||||||||||||||||||||    
T  43490407 aaagtgtggttatgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttttc 43490501  T

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Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 1750508 - 1750416
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||| ||||||||| |||| ||||| ||||||||| ||||||| || ||||||||||||||||||||||||    
T  1750508 aaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1750416  T

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Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 14285774 - 14285678
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||  | ||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||||||  ||||| |||||    
T  14285774 agagaaagtatgactctgagatgaatttaccaaaatatctttaatatatagggtgtacaatagggtgtatgattaaagggtgtttgtgtaatatttt 14285678  T

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Target: chr2; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 34895747 - 34895835
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaaca 93  Q
    |||||||| |||||||||||||||||||| || ||| |||||||| | |||||||||||||||| |||||||| |||||||||||||||    
T  34895747 aaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaaca 34895835  T

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Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4451952 - 4452026
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgatta 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||| | ||||||||||    
T  4451952 agagaaagtatggttgtgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgtatgatta 4452026  T

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Target: chr2; HSP #16
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 6518484 - 6518568
Alignment:
Q  14 ttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    |||||||||||| |||||||||| ||| |||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  6518484 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttttc 6518568  T

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Target: chr2; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 12302259 - 12302351
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||| ||||||||| |||| ||||| ||||||||| |||||||  | ||||||||||||||||||||||||    
T  12302259 aaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 12302351  T

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Target: chr2; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 19047251 - 19047159
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| |  |||| || ||||||||||||||||||||||||    
T  19047251 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 19047159  T

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Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 34817778 - 34817874
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||| |||||||||||||||||||||||||| | | || ||||| | |||||||||  ||||| ||| ||||||||||||||||||||||||    
T  34817778 agagaaagtgtggttgtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacatttt 34817874  T

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Target: chr2; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 4764732 - 4764824
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||||||||||||||||   |||| ||| | ||||||||||||||||| || |||| |||||| ||||||||||||    
T  4764732 aaagtgtggttgtgagatgaatttaccaaaatatttataatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacatttt 4764824  T

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Target: chr2; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 8896587 - 8896683
Alignment:
Q  3 agaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||| || ||||||||||||||||||||||||| | || || |||| ||||||||| |  ||| ||| ||||||||||||||||||||||||||    
T  8896587 agaaagtgtgattgtgagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttttc 8896683  T

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Target: chr2; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 30838726 - 30838634
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | |||||||||| | ||||  | ||||||||||||||||||||||||    
T  30838726 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 30838634  T

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Target: chr2; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 13780737 - 13780833
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||| ||||||||||||||||||| |||||||||| ||||| || | |||||||||  ||||| ||| ||||  ||||| ||||||||||||    
T  13780737 agagaaagtgtggttgtgagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacatttt 13780833  T

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Target: chr2; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 16096841 - 16096749
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| |||||||||||| || | |||||||||||| |||| ||| | ||||| ||| ||||||| || ||||||||||||||||||||||||    
T  16096841 aaagtgtggttgtgagattaactcaccaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacatttt 16096749  T

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Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12531665 - 12531744
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggt 81  Q
    |||||||||||||||||||||||||||||||||||   || |||||| |   ||||||||| |||||||||||||||||||    
T  12531665 agagaaagtatggttgtgagatgaatttaccaaaa-gcccataatgcttgaggtgtacaattgggtgtatgattaaagggt 12531744  T

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Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 7070504 - 7070416
Alignment:
Q  11 tggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||||| ||||||||||| |||||| |||  |||  || |||  |||||| || ||||||| ||||||||||||||||||||||||||    
T  7070504 tggttgtaagatgaatttatcaaaatgtccccaataaatggaggttacaatgggatgtatgaataaagggtgttcatgtaacatttttc 7070416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 42026865 - 42026769
Alignment:
Q  3 agaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaa--gggtgttcatgtaacatttt 97  Q
    ||||||| | |||||||||||||||| ||||||||||| ||||||   |  |||||||| |  ||||||| ||||  ||||||||||||||||||||    
T  42026865 agaaagtgtagttgtgagatgaatttgccaaaatatccctaatgcgcgggatgtacaatggaatgtatgaataaattgggtgttcatgtaacatttt 42026769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 33229381 - 33229301
Alignment:
Q  20 gatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttttc 99  Q
    |||||| |||||||||||||| |||| ||| | |||||||||  |||||| | || |||||||||||||||| ||||||||    
T  33229381 gatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttttc 33229301  T

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Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 43335777 - 43335861
Alignment:
Q  13 gttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||| |||||||||||||| |||| ||| |  ||||||||  |||||| || |||| | ||||||| |||||||||    
T  43335777 gttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacatttt 43335861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17208172 - 17208076
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||  |||||||||||||||||||||| ||||||||||    
T  17208172 agagaaagtatggttgtgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacatttt 17208076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 32473396 - 32473492
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||   |||||||||| ||||||||||||||||||||||||||||||||||    
T  32473396 agagaaagtatggttgtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 32473492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30622721 - 30622816
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | |  |||||||||||||||||||||||| |||||||||||||||||    
T  30622721 agagaaagtatggttgtgagataaatttaccaaaatatccttaatgcat-gggcttacaatagggtgtatgattaaaggatgttcatgtaacatttt 30622816  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 2614655 - 2614747
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| || |||| || ||||||||||||||||||||||||    
T  2614655 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 2614747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 22512399 - 22512307
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| ||||||||||| | ||||| || ||||||||||||||||||||||||    
T  22512399 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 22512307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 41334669 - 41334761
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||| |||  ||||||||| ||||||||||||||||||||||||    
T  41334669 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacatttt 41334761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 7617227 - 7617135
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||| ||| | |||||||| ||||||||||||||||||||||||    
T  7617227 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacatttt 7617135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 18034076 - 18033984
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||| ||||||||| |||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||    
T  18034076 aaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 18033984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 5257089 - 5256995
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 99  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||||||| || ||||||| |||| |||||| ||||||||||||||    
T  5257089 aaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 5256995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 33801563 - 33801471
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||| ||||||||| |||| ||| ||||||||||| |||||||  | |||||| |||||||||||||||||    
T  33801563 aaagtgtggttgtgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacatttt 33801471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 38470673 - 38470581
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| || |||||| ||||||||||||||||||||||||| ||| | ||||||||| |  ||||||| ||||||||||| ||||||||||||    
T  38470673 aaagtgtgattgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 38470581  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 33855071 - 33855141
Alignment:
Q  27 ttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    |||||||||| | | |||| ||| | ||||||||| ||||||| || ||||||||||||||||||||||||    
T  33855071 ttaccaaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 33855141  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 25915041 - 25915098
Alignment:
Q  53 gtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcctaaaataaat 110  Q
    |||||||||  |||||| || ||||||||||||||||||||||||||  |||||||||    
T  25915041 gtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaaaaaataaat 25915098  T

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Target: scaffold0100 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 35458 - 35554
Alignment:
Q  1 agagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||| | |||||||||| |||||||||||||| |||||| ||||||||||||    
T  35458 agagaaagtatggttgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacatttt 35554  T

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Target: scaffold0038 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 112749 - 112657
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| ||||| ||||||||| |  |||| || ||||||||||||||||||||||||    
T  112749 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 112657  T

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Target: scaffold0385 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 11345 - 11253
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| ||||  || | ||||||||| |||||||||| ||||| |||||||||| |||||||    
T  11345 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacatttt 11253  T

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Target: scaffold0187 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 14194 - 14286
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||| ||||||||| |||| |||||  |||||||| |||||||  | ||||||||||||||||||||||||    
T  14194 aaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 14286  T

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Target: scaffold0187; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 24522 - 24614
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||| ||||||||| |||| |||||  |||||||| |||||||  | ||||||||||||||||||||||||    
T  24522 aaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 24614  T

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Target: scaffold0119 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 779 - 687
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||| |||   |||||||||  |||||| || ||||||||||||||||||||||||    
T  779 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 687  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 23427 - 23519
Alignment:
Q  5 aaagtatggttgtgagatgaatttaccaaaatatccttaatgcatagagtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 97  Q
    ||||| || |||| ||||||| |||||||||||||  |||| ||| |  |||||||| | ||||| || |||||||||||||| |||||||||    
T  23427 aaagtgtgattgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacatttt 23519  T

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