View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_27 (Length: 455)
Name: NF13777_low_27
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Original strand, 47229109 - 47229552
Alignment:
| Q |
16 |
cagtatatatattcgtgtcaatggtctcaaatgatagtgttcatacttcataatatgcttgataaaacaaattgaagccccttttaggtttttatatagc |
115 |
Q |
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| T |
47229109 |
cagtatatatattcatgtcaatggtctcaaatgatagtgttcatacttcataatatgattgataaaacaaattgaagccccttttaggtttttatatagc |
47229208 |
T |
|
| Q |
116 |
tcattgtaaaacaataagaaagattaggattgagcaacatatcatagatgacttaatttagttctttcttcttctttttcttgggtgaagggcttatcaa |
215 |
Q |
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| T |
47229209 |
tcattgtaaaacaataagaaagattaggattgagcaacatatcatagatgacttaatttagttctttcttcttctttttcttgggtgaagggcttgtcaa |
47229308 |
T |
|
| Q |
216 |
ttgtcttgcat--------tggtaannnnnnnnatcatgcaaacgtaataaaatatgttaattggtgttttcgatgttgatacatgacgttgtaatagat |
307 |
Q |
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| T |
47229309 |
ttgtcttgcatagttgcattggtaattttttt-atcatgcaaacgtaataaaatatgttaattggtgtcttcgatgttgatacatgacgttgcaatagat |
47229407 |
T |
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| Q |
308 |
gtgaaccgtttgatcttaaattgatggtcaaggccgtttcaaagggtcgagttttaaatttgaactgtttaaccttaaataaacggccaagatccgtaca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47229408 |
gtgaaccgtttgatcttaaattgatggtcaaggccgtttcaaagggtcgagttttaaatttgaactgtttaaccttaaataaacggccaagatccgtaca |
47229507 |
T |
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| Q |
408 |
acttaaacatgtgtgaaatccctacaacaatgaatcccgtctctg |
452 |
Q |
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| T |
47229508 |
acttaaacatgtgtgaaatccctacaacaatgaatcccgtttctg |
47229552 |
T |
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