View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_28 (Length: 445)
Name: NF13777_low_28
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 40617380 - 40617807
Alignment:
| Q |
1 |
tagttatatatgttacctgcgctaaaatcgttcaaagtgagtaatgcttgtgtgccggaggatacatagggtggagaacacctatattgagggtatgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40617380 |
tagttatatatgttacctgcgctaaaatcgttcaaagtgagtaatgcttgtgtgccggaggatacatagggtggagaacacctatattgagggtatgatt |
40617479 |
T |
|
| Q |
101 |
gtccatcgcactgtaagttgccggaggttcggcaagtcccaccatccccgcttggtggtggtggtgaaggtgatggttgggagcagatgcgggtcccaac |
200 |
Q |
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| T |
40617480 |
gtccatcgcactgtaagttgccagaggttcggcaagtcccaccacccccgcttggtggtggtggtgaaggtgatggttgggagcagatgcgggttccaac |
40617579 |
T |
|
| Q |
201 |
gtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctacaaggtccattgcatgaggaaatagcatccgtg |
300 |
Q |
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| T |
40617580 |
gtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctacaaggtccgttgcatgaggaaatagcatccgtg |
40617679 |
T |
|
| Q |
301 |
aggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagccattgagattagaatagagagtgagtagattt |
400 |
Q |
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| T |
40617680 |
aggaatggaccgtttatgatgttaaaaaagaaaatggaagctaaaaaaacaagatttgatatctgagccattgagattagaatagagagtgagtagtttt |
40617779 |
T |
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| Q |
401 |
tgtgtgctcgagcttcaagtgttacttt |
428 |
Q |
| |
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| T |
40617780 |
tgtgtgcttgagcttcaagtgttacttt |
40617807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 192 - 383
Target Start/End: Complemental strand, 40641069 - 40640878
Alignment:
| Q |
192 |
ggtcccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctacaaggtccattgcatgaggaaata |
291 |
Q |
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| T |
40641069 |
ggtcccaacgtcagggtcatcgttgcattttccattgatgcaaatgagttgaccagcgcagtcgttgagagttttacaaggtccgttgcatgaggaaata |
40640970 |
T |
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| Q |
292 |
gcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagccattgagattagaat |
383 |
Q |
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| T |
40640969 |
acatttgtaaggaatggaatgtttatgatgttgaaaaggaaaatggaagctaaaaaaacaagatttgaaacgtgagccattgagattagaat |
40640878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 70 - 389
Target Start/End: Original strand, 40628024 - 40628340
Alignment:
| Q |
70 |
ggtggagaacacctatattgagggtatgattgtccatcgcactgtaagttgccggaggttcggcaagtcccaccatccccgcttggtggtggtggtgaag |
169 |
Q |
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| T |
40628024 |
ggtggagaacacctatattgagggtatgatttttttttgcactgtaaggtgccggaggattggcaagtgccgccaccaccgccacttggtggtg---acg |
40628120 |
T |
|
| Q |
170 |
gtgatggttgggagcagatgcgggtcccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctaca |
269 |
Q |
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| T |
40628121 |
gtgagggattggtgcagatgtgggtcccaatgtcggggtcatcgttgcatttgccgttgatgcaaatgagttgaccatcacaatcattgagagtgttgca |
40628220 |
T |
|
| Q |
270 |
aggtccattgcatgaggaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagcc |
369 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||| || || |||| ||||||| ||||| |||||||||||| ||||| |
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| T |
40628221 |
tggtccattgcatgaggaaatagcatttgtgaggaatggaatgtttataatattgaaaaggaaaatgcaagctagaaaaataagatttgatatgcgagcc |
40628320 |
T |
|
| Q |
370 |
attgagattagaatagagag |
389 |
Q |
| |
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|| |||||||||| |||||| |
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| T |
40628321 |
atcgagattagaacagagag |
40628340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 389
Target Start/End: Original strand, 40610925 - 40611131
Alignment:
| Q |
183 |
gcagatgcgggtcccaacgtcagggtcatcgttgcattttccgttgatgcaaatgagttgaccagcgcagtcgttgagagttctacaaggtccattgcat |
282 |
Q |
| |
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||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | || ||| |||||| |
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| T |
40610925 |
gcagatgtgggtcccaatatctgggtcatcgttacattttccgttgatgcaaatgagttgaccataacagtcgttgagatcgttgcatcctccgttgcat |
40611024 |
T |
|
| Q |
283 |
gaggaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctnnnnnnncaagatttgatatctgagccattgagattagaa |
382 |
Q |
| |
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| T |
40611025 |
gaagaaatagcgttggtgaggaaaggaaggtttgtaatgttgaaaaggaaaatggaagctagaaaaacaagatttgatatgagagtcattgagagtatag |
40611124 |
T |
|
| Q |
383 |
tagagag |
389 |
Q |
| |
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||||||| |
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|
| T |
40611125 |
tagagag |
40611131 |
T |
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