View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_3 (Length: 658)
Name: NF13777_low_3
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 597; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 17 - 641
Target Start/End: Complemental strand, 24231790 - 24231166
Alignment:
| Q |
17 |
ttacatttgatggcttcacagttactgcccctgcagacagtcccaacacagatggaatccacatgggaagatcaactgatgttaaaattcttaacaccaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24231790 |
ttacatttgatggcttcacagttactgccccttcagacagtcccaacacagatggaatccacatgggaagatcaactgatgttaaaattcttaacaccaa |
24231691 |
T |
|
| Q |
117 |
catcggtaccggagatgattgtgtctcattgggagatggtagcagaaaaatcactgtccaaggtgtgaaatgtggacctggtcatggtattagtgttgga |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24231690 |
tatcggtaccggagatgattgtgtctcattgggagatggtagcagaaaaatcactgtccaaggtgtgaagtgtggacctggtcatggtattagtgttgga |
24231591 |
T |
|
| Q |
217 |
agccttggaaggtatacgaccgaagataatgtagaaggagttacagttaagaactgtactctaacctcaactcaaaatggtgtgaggattaagacttggc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24231590 |
agccttggaaggtatacgaccgaagataatgtagaaggagttacagttaagaactgtactctaaccgcaactcaaaatggtgtgaggattaagacttggc |
24231491 |
T |
|
| Q |
317 |
ctgatgcaccaggaacaattactgtttctgatatacattttgaagatattaccatgaataatgtcatgaaccctatcatcattgaccaagagtattgtcc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24231490 |
ctgatgcaccaggaacaattactgtttctgatatacattttgaagatattaccatgaataatgtcacgaaccctatcatcattgaccaagagtattgtcc |
24231391 |
T |
|
| Q |
417 |
atggaacgcgtgcaacaaaaaggtaatcactcaagaacttatatatcttgttttgtttatgcataagcttatgttacaattaaactataatttaagtgac |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24231390 |
atggaacgcgtgcaacaaaaaggtaatcactcaagaacttatatatcttgttttgtttatgcataagcttatgttacaattaaactataatttaagttac |
24231291 |
T |
|
| Q |
517 |
taacttttgttcattcttgcatcgttttcaatggtttaggttccatcaaaagtaaagttaagcaagatttcattcaagaacattcagggaacctcaggag |
616 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24231290 |
taacttttgttcattcttgcatggttttcaatggtttaggttccatcaaaagtaaagttaagcaagatttcattcaagaacattcagggaacctcaggag |
24231191 |
T |
|
| Q |
617 |
ctccagaaggagtggttcttgtttg |
641 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
24231190 |
ctccagaaggagtggttcttgtttg |
24231166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 448
Target Start/End: Complemental strand, 24243488 - 24243053
Alignment:
| Q |
13 |
aatattacatttgatggcttcacagttactgcccctgcagacagtcccaacacagatggaatccacatgggaagatcaactgatgttaaaattcttaaca |
112 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
24243488 |
aatattacatttgatagcttcacaattactgcccctggagacagtcccaacactgatggaatccacatgggaaaatcaactggtgttaaaattcttaaca |
24243389 |
T |
|
| Q |
113 |
ccaacatcggtaccggagatgattgtgtctcattgggagatggtagcagaaaaatcactgtccaaggtgtgaaatgtggacctggtcatggtattagtgt |
212 |
Q |
| |
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| |||||||||||||||||||| ||||||||| | || |||||||| | | ||||||||||| |||||||||| |||||||||||||||||| ||||| | |
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| T |
24243388 |
ctaacatcggtaccggagatgactgtgtctcaattggtgatggtagtaaacaaatcactgtcgaaggtgtgaagtgtggacctggtcatggtcttagtat |
24243289 |
T |
|
| Q |
213 |
tggaagccttggaaggtatacgaccgaagataatgtagaaggagttacagttaagaactgtactctaacctcaactcaaaatggtgtgaggattaagact |
312 |
Q |
| |
|
|||||||||||||| || |||||| ||||| |||||||| || ||||| |||||||||||||||| || ||||| | |||||||||||||| |||||| |
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| T |
24243288 |
tggaagccttggaaagtttacgactgaagaaaatgtagaggggattacaattaagaactgtactctgacagcaactgacaatggtgtgaggatcaagact |
24243189 |
T |
|
| Q |
313 |
tggcctgatgcaccaggaacaattactgtttctgatatacattttgaagatattaccatgaataatgtcatgaaccctatcatcattgaccaagagtatt |
412 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||| |
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| T |
24243188 |
tggcctgatgcaccgggaacaattactgtttctgatatacattttgaagatattaccatgacgaatgtcaagaaccctgtcatcatagaccaagagtatt |
24243089 |
T |
|
| Q |
413 |
gtccatggaacgcgtgcaacaaaaaggtaatcactc |
448 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
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| T |
24243088 |
gtccatggaacgcgtgctccaaaaaggtaatcactc |
24243053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 24298710 - 24299145
Alignment:
| Q |
13 |
aatattacatttgatggcttcacagttactgcccctgcagacagtcccaacacagatggaatccacatgggaagatcaactgatgttaaaattcttaaca |
112 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
24298710 |
aatattacatttgatagcttcacaattactgcccctggagacagtcccaacactgatggaatccacatgggaaaatcaactggtgttaaaattcttaaca |
24298809 |
T |
|
| Q |
113 |
ccaacatcggtaccggagatgattgtgtctcattgggagatggtagcagaaaaatcactgtccaaggtgtgaaatgtggacctggtcatggtattagtgt |
212 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| | || |||||||| | | ||||||||||| |||||||||| |||||||||||||||||| ||||| | |
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| T |
24298810 |
ctaacatcggtaccggagatgactgtgtctcaattggtgatggtagtaaacaaatcactgtcgaaggtgtgaagtgtggacctggtcatggtcttagtat |
24298909 |
T |
|
| Q |
213 |
tggaagccttggaaggtatacgaccgaagataatgtagaaggagttacagttaagaactgtactctaacctcaactcaaaatggtgtgaggattaagact |
312 |
Q |
| |
|
|||||||||||||| || |||||| ||||| |||||||| || ||||| |||||||||||||||| || |||| | |||||||||||||| |||||| |
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| T |
24298910 |
tggaagccttggaaagtttacgactgaagaaaatgtagaggggattacaattaagaactgtactctgacagcaaccgacaatggtgtgaggatcaagact |
24299009 |
T |
|
| Q |
313 |
tggcctgatgcaccaggaacaattactgtttctgatatacattttgaagatattaccatgaataatgtcatgaaccctatcatcattgaccaagagtatt |
412 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||| |
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| T |
24299010 |
tggcctgatgcaccgggaacaattactgtttctgatatacattttgaagatattaccatgacgaatgtcaagaaccctgtcatcatagaccaagagtatt |
24299109 |
T |
|
| Q |
413 |
gtccatggaacgcgtgcaacaaaaaggtaatcactc |
448 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24299110 |
gtccatggaacgcgtgctccaaaaaggtaatcactc |
24299145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 500 - 641
Target Start/End: Complemental strand, 24242953 - 24242811
Alignment:
| Q |
500 |
actataatttaagtgactaacttttgttcatt-cttgcatcgttttcaatggtttaggttccatcaaaagtaaagttaagcaagatttcattcaagaaca |
598 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||||||| || ||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
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| T |
24242953 |
actataattcaaatgactaacttttgttcatttcttgcatggtattcaatggtttagaatccatcaaaaataaagttaagcaagattacattcaagaacg |
24242854 |
T |
|
| Q |
599 |
ttcagggaacctcaggagctccagaaggagtggttcttgtttg |
641 |
Q |
| |
|
|| |||||||||||||| || |||||||||| |||||| |||| |
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|
| T |
24242853 |
ttaagggaacctcaggaactgcagaaggagttgttcttatttg |
24242811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 500 - 641
Target Start/End: Original strand, 24299245 - 24299387
Alignment:
| Q |
500 |
actataatttaagtgactaacttttgttcatt-cttgcatcgttttcaatggtttaggttccatcaaaagtaaagttaagcaagatttcattcaagaaca |
598 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||||||| || ||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
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| T |
24299245 |
actataattcaaatgactaacttttgttcatttcttgcatggtattcaatggtttagaatccatcaaaaataaagttaagcaagattacattcaagaacg |
24299344 |
T |
|
| Q |
599 |
ttcagggaacctcaggagctccagaaggagtggttcttgtttg |
641 |
Q |
| |
|
|| |||||||||||||| || |||||||||| |||||| |||| |
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|
| T |
24299345 |
ttaagggaacctcaggaactgcagaaggagttgttcttatttg |
24299387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 42844204 - 42844365
Alignment:
| Q |
61 |
aacacagatggaatccacatgggaagatcaactgatgtt---aaaattcttaacaccaacatcggtaccggagatgattgtgtctcattgggagatggta |
157 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||| | ||| |||| ||||| ||||| ||| |||||||||||| ||||||||||| | || | |
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| T |
42844204 |
aacactgatggaatacacattggaagatcaactgatgatgtgaaagttctcaacacaaacatttctactggagatgattgtatctcattgggacaaggaa |
42844303 |
T |
|
| Q |
158 |
gcagaaaaatcactgtccaaggtgtgaaatgtggacctggtcatggtattagtgttggaagc |
219 |
Q |
| |
|
||||| |||| || |||||| |||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
42844304 |
gcagacaaataacagtccaaaatgtgaattgtggacctggtcatggaattagtgtcggaagc |
42844365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 42844490 - 42844568
Alignment:
| Q |
344 |
ctgatatacattttgaagatattaccatgaataatgtcatgaaccctatcatcattgaccaagagtattgtccatggaa |
422 |
Q |
| |
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||||||| ||||||||||||| || |||| ||||||| | ||||| | ||||||||||||||||||||||| ||||| |
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| T |
42844490 |
ctgatatgcattttgaagatactatcatggttaatgtcctaaacccagtgatcattgaccaagagtattgtccttggaa |
42844568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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