View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_30 (Length: 436)
Name: NF13777_low_30
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_30 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 12467145 - 12467565
Alignment:
| Q |
1 |
tctgttggagtttctgtcaccttctcccatgtttgtgtaatgtttctgcatggatatgagtacatgtaatccattattt-caatgattcattcaaaaact |
99 |
Q |
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| T |
12467145 |
tctgttggagtttgtgtcaccttctcccatgtttgtgtaatgtttctgcatggatatgagtacatgtaatccattattttcaatgatccattaaaaaact |
12467244 |
T |
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| Q |
100 |
aattatggaagactacattaagcaaatcacattcaattatacaaatgcacagctttaaatatatgtataaggaccttaaataatttgggcatatgcatta |
199 |
Q |
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| T |
12467245 |
aattatggaagactacattaagcaaatcacattcaattatacaaatgcacagcttaaaatatatgtataaggaccttaaataatttgggcatatgcatta |
12467344 |
T |
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| Q |
200 |
aatttatgggtcatgctaacttgtacacttcacagttatattattttgtgcatcattaacaaatataattagtgtataataattttcatcacatttgatg |
299 |
Q |
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| T |
12467345 |
aatttatgggtcatgctaacttgtacacttcacggttatattatttcgtgcatcattaacaaatataattagtgtataataattttcatcacatttgatg |
12467444 |
T |
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| Q |
300 |
tagaaagagataattcaaaaagctattaccnnnnnnngttacatcctctagttgcagaagtcttcttccaattttctttgaagtcgacagatctaactac |
399 |
Q |
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| T |
12467445 |
tagaaagagataattcaaaaagctattaccttcttttgttacatcctctagttgcagaagtcttcttccaattttctttgaagtcgacagatctaactac |
12467544 |
T |
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| Q |
400 |
tggagcaatggaagaaaattc |
420 |
Q |
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| T |
12467545 |
tggagcaatggaagaaaattc |
12467565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 478751 - 478700
Alignment:
| Q |
1 |
tctgttggagtttctgtcaccttctcccatgtttgtgtaatgtttctgcatg |
52 |
Q |
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| T |
478751 |
tctgttggagtttctgtcaccttctcccatgtttgtgtagttcttctgcatg |
478700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 477832 - 477787
Alignment:
| Q |
372 |
tttctttgaagtcgacagatctaactactggagcaatggaagaaaa |
417 |
Q |
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| T |
477832 |
tttctttgaagtcgatagatctaattactggattaatggaagaaaa |
477787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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