View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_33 (Length: 431)
Name: NF13777_low_33
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 9444204 - 9444606
Alignment:
| Q |
17 |
acgttacagtattgaagctgtttgatgctgaatattttgtgcaatcaatcaattacaacaattacacaatacgagttgttgacccaaacattcaacctac |
116 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9444204 |
acgttacagtattgaagctgtatgatgctgaatatttggtgcaatcaatcaattacaacaattacacaatacgagttgttgacccaaacattcaacctac |
9444303 |
T |
|
| Q |
117 |
caattgctcctctctccctcacttcttcttatacagcaacaattttacccaaaaagatactaattcatacaaatacagcttccgtcgatcgaattccacg |
216 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9444304 |
caactgctcctctctccctcacttcttcttatacagaaacaattttacccaaaaagatactaattcatacaaatacagcttccgtcgatcgaattccacg |
9444403 |
T |
|
| Q |
217 |
tttgtttattccgatagaattgatttatccaggcctgtaatttacctgaagtgtacaagtccacctagtaacgttgtggataagtattatacggatacaa |
316 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9444404 |
tttgattattccgatagaattgatttatccaggcctgtaatttacctgaagtgtacaagtccacctagtaacgttgtggataaatattatacggatacaa |
9444503 |
T |
|
| Q |
317 |
cttcatgcctggatcaacacacatatgttattgtcggggacccacaacttggaatattgcagcctcattgccgtgttaagcttgttactctcacatcctt |
416 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9444504 |
cttcatgcctggatgaacacacatatgttattgtcggggacccacaacttggaatattgcagcctcaatgccgtgttaagcttgttactctcacatcctt |
9444603 |
T |
|
| Q |
417 |
ctg |
419 |
Q |
| |
|
||| |
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|
| T |
9444604 |
ctg |
9444606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 238 - 415
Target Start/End: Complemental strand, 9417804 - 9417627
Alignment:
| Q |
238 |
gatttatccaggcctgtaatttacctgaagtgtacaagtccacctagtaacgttgtggataagtattatacggatacaacttcatgcctggatcaacaca |
337 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||||| |||||||| ||||||||||||||||||| | |
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| T |
9417804 |
gatttatcttggcctgtaatttacctgaagtgtacaagtccacctagtaatgatgtgaatatgtattatgcggatacagcttcatgcctggatcaacaaa |
9417705 |
T |
|
| Q |
338 |
catatgttattgtcggggacccacaacttggaatattgcagcctcattgccgtgttaagcttgttactctcacatcct |
415 |
Q |
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||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
9417704 |
catatgttattgttggggatccacactttggaatattgcagcctcaatgccgtgttgagcttgttactctcacatcct |
9417627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 9423971 - 9424115
Alignment:
| Q |
17 |
acgttacagtattgaagctgtttgatgctgaatattttgtgcaatcaatcaattacaacaattacacaatacgagttgttgacccaaacattcaacctac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| | |
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| T |
9423971 |
acgttacagtattgaagctgtttgatgctgaatattttgtgcaatcaatcaattacaataattacacaatacgagttgttgaccctaatattcaacccaa |
9424070 |
T |
|
| Q |
117 |
caattgctcctctctccctcacttcttcttatacagcaacaattt |
161 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| ||| |||||| |
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|
| T |
9424071 |
caattgctcctctctccctcgcttcttcttataccgcaccaattt |
9424115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 228 - 419
Target Start/End: Original strand, 9424203 - 9424397
Alignment:
| Q |
228 |
cgatagaattgatttatccaggcctgtaatttacctgaagtgtacaagtccacctagtaacgttgtggataagtattatacggatacaacttcatgcctg |
327 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||| ||| |||||||||||||||| |||| ||| || |
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| T |
9424203 |
cgatggaattgatttatctaggcctgtaatttacatgaactgtacaagtccacctagtaacaatgtgaatatgtattatacggatacatcttcttgcatg |
9424302 |
T |
|
| Q |
328 |
gatcaac---acacatatgttattgtcggggacccacaacttggaatattgcagcctcattgccgtgttaagcttgttactctcacatccttctg |
419 |
Q |
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| ||||| ||| ||||| |||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| |
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| T |
9424303 |
ggtcaacacaacatatatgctattgttggggacccacaacttggaatattggagcctcaatgtcgtgttaagcttgttactctcacatccttctg |
9424397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 9418049 - 9417905
Alignment:
| Q |
17 |
acgttacagtattgaagctgtttgatgctgaatattttgtgcaatcaatcaattacaacaattacacaatacgagttgttgacccaaacattcaacctac |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| | |
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| T |
9418049 |
acgttacagtattgaagctgtatgatgctgaatattttgtgcaatcaatcaattacaagaattacacaatacgagttgttgaccctaatattcaacccaa |
9417950 |
T |
|
| Q |
117 |
caattgctcctctctccctcacttcttcttatacagcaacaattt |
161 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||| ||| |||||| |
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| T |
9417949 |
caattgctcctctctccctcgcttcttcatataccgcaccaattt |
9417905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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