View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_low_38 (Length: 403)
Name: NF13777_low_38
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Original strand, 26357565 - 26357951
Alignment:
| Q |
11 |
cagagagcaacagttatgcatagcgagtgatatagtacgattaagttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaacta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26357565 |
cagagagcaacagttatgcatagcgagtgatatagtacaattaagttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaacta |
26357664 |
T |
|
| Q |
111 |
agcactgatgcaatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagtt |
210 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26357665 |
agaactgatgcaatacctaaagattcaacaagctattactaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagtt |
26357764 |
T |
|
| Q |
211 |
ggttgtac----------aacactgatatcaaacatgtaagctagtaatatccaaatcacggtgttggatggattgagaagacaatttcaaatatatgcc |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
26357765 |
ggttgtacaacactgataaacactgatatcaaacatgtaagctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgcc |
26357864 |
T |
|
| Q |
301 |
agaaacaactcccaggttaatccatccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttctaac |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26357865 |
agaaacaactcccaggttaatccatccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttctaac |
26357951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 57 - 385
Target Start/End: Original strand, 51759446 - 51759767
Alignment:
| Q |
57 |
tgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaacact |
156 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |||||| |
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|
| T |
51759446 |
tgagctgggaacataaattaagcaacaattatacataaccaagagtaagaact-------gatgcagtatctaaagattcaacaagctattactaacact |
51759538 |
T |
|
| Q |
157 |
ccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagctagtaatatccaaa |
256 |
Q |
| |
|
| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |
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|
| T |
51759539 |
ctaaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatctaaa |
51759638 |
T |
|
| Q |
257 |
tcacggtgttggatggattgagaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcacaatgttatcataaagattctagag |
356 |
Q |
| |
|
| || ||||| |||||||||||||||||||| ||||||| |||||||||||||| | |||||||||| ||||||||||| | || ||| || ||||| |
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|
| T |
51759639 |
taactatgttgaatggattgagaagacaattttgaatatataccagaaacaactccgaagttaatccatacttcacaatgtcacgatgaagcttttagag |
51759738 |
T |
|
| Q |
357 |
ataaagatcaagcagcaaaataggttcta |
385 |
Q |
| |
|
|| || ||||||||||||||||||||||| |
|
|
| T |
51759739 |
atcaaaatcaagcagcaaaataggttcta |
51759767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 54 - 385
Target Start/End: Original strand, 6684843 - 6685167
Alignment:
| Q |
54 |
agttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaac |
153 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||| |
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|
| T |
6684843 |
agttgagctgggaacataaattatgcaacaattatacataaccaagagtaagaact-------gatgcagtacctaaagattcaacaagctatacctaac |
6684935 |
T |
|
| Q |
154 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagctagtaatatcc |
253 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
6684936 |
actctaaatcaaaagggcagcatccaactgttatactaatattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatcc |
6685035 |
T |
|
| Q |
254 |
aaatcacggtgttggatggattgagaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcacaatgttatcataaagattcta |
353 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||| ||||| ||| | || |
|
|
| T |
6685036 |
aaataactatgttgaatggactgagaagacaattttgaatatatgccaaaaacaactcccaagttaatccatacttcacaatgtcatcatgaagctctta |
6685135 |
T |
|
| Q |
354 |
gagataaagatcaagcagcaaaataggttcta |
385 |
Q |
| |
|
||||| || ||||| ||||||||| ||||||| |
|
|
| T |
6685136 |
gagatcaaaatcaaccagcaaaattggttcta |
6685167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 64 - 312
Target Start/End: Original strand, 30821828 - 30822069
Alignment:
| Q |
64 |
ggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaacactccaaatc |
163 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||||||||||| ||| || |||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
30821828 |
ggaacagaaattaagcaacaattataaataaccaagagtaagaact-------gattcagtacctaaatattcaacaagctattactaacactcttaatc |
30821920 |
T |
|
| Q |
164 |
aaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagctagtaatatccaaatcacggt |
263 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
30821921 |
aaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatccaaataactat |
30822020 |
T |
|
| Q |
264 |
gttggatggattgagaagacaatttcaaatatatgccagaaacaactcc |
312 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
30822021 |
gttgaatggattgagaagacaattttgaatatatgccagaaaaaactcc |
30822069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 54 - 301
Target Start/End: Original strand, 30812556 - 30812796
Alignment:
| Q |
54 |
agttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaac |
153 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||| |
|
|
| T |
30812556 |
agttgagctgggaacataaattaagcaacaattataaataaccaagagtaagaact-------gattcagtacctaaagattcaacaagctattactaac |
30812648 |
T |
|
| Q |
154 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagctagtaatatcc |
253 |
Q |
| |
|
|||| |||||| |||| | ||||||| |||||||||||||| |||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
30812649 |
actcttaatcaacagggcaacatccaactgttatactaacatttcaaatcaaaaattggttgtacaaaactaatatcatacatgtaagctagtaatatcc |
30812748 |
T |
|
| Q |
254 |
aaatcacggtgttggatggattgagaagacaatttcaaatatatgcca |
301 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||| |||| |||||| |
|
|
| T |
30812749 |
aaataactatgttgaatggactgagaagacaattttgaataaatgcca |
30812796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 54 - 257
Target Start/End: Original strand, 12592521 - 12592717
Alignment:
| Q |
54 |
agttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaac |
153 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||| | |||| | ||||||||||||||| |||||||||| ||| |
|
|
| T |
12592521 |
agttgagctgggaacagaaattaagcaataattatacataaccaagagaaagaatt-------gatgtagtacctaaagattcaataagctattactaac |
12592613 |
T |
|
| Q |
154 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagctagtaatatcc |
253 |
Q |
| |
|
| | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
12592614 |
aaactaaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgataacatacatgtaagctagtaatatcc |
12592713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 54 - 333
Target Start/End: Original strand, 27810568 - 27810826
Alignment:
| Q |
54 |
agttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaagaactaagcactgatgcaatacctaaagattcaacaagctattaccaac |
153 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
27810568 |
agttgagatgggaacagaaattaagcaacaattataaataaccaagagtaagaact-------gatgcagtacctaaagattcaacaagctattactaac |
27810660 |
T |
|
| Q |
154 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtaagc--tagtaatat |
251 |
Q |
| |
|
|||| |||||||||||| || |||||| |||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |
|
|
| T |
27810661 |
actctaaatcaaaagggcag----------------taacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctatagtaatat |
27810744 |
T |
|
| Q |
252 |
ccaaatcacggtgttggatggattgagaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcaca |
333 |
Q |
| |
|
|||||| || ||||| ||||| |||||| ||||||| |||||| |||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
27810745 |
ccaaataactatgttgaatggactgagaatacaattttgaatataagccagaaaaaactcccaagttaatccatacttcaca |
27810826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 2942576 - 2942525
Alignment:
| Q |
54 |
agttgagcagggaacaaaaattgagcaacaattatacataaccaagagtaag |
105 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
2942576 |
agttgagctgggaacagaaattaagcaacaatcatacataaccaagagtaag |
2942525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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