View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_low_40 (Length: 388)
Name: NF13777_low_40
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 6 - 292
Target Start/End: Complemental strand, 32443853 - 32443567
Alignment:
| Q |
6 |
gagatgaagacatggaaactcccaacaaagacgaaacagaaatctcgaaagtagaattcaatgattccgagatcgaatacatcagctacggcggcgaaca |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32443853 |
gagaagaagacatggaaactcccaacaaagacgaaacagaaatctcgaaagtagaattcaatgattccgagattgaatacatcagctacggcggcgaaca |
32443754 |
T |
|
| Q |
106 |
tcacctccctctcatcatgaatcttgtcgacgaagaactcagcgaaccttactccatcttcacctatcgctacttcgtttatctatggcctcatctttct |
205 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32443753 |
tcacctccctctcatcatgaaccttgtcgacgaagaactcagcgaaccttactccatcttcacctatcgctacttcgtttatctatggcctcatctttct |
32443654 |
T |
|
| Q |
206 |
tttctggtgctaaatctttcctcttttcacctttttattatctgggtaatttttcaattcaccgttaatcactttgatttattaaca |
292 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32443653 |
tttctggtgctaaatctttcctctttttacctttttattatctgggtaatttttcaattcaccgttaatcactttgatttattaaca |
32443567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 32443527 - 32443483
Alignment:
| Q |
332 |
ataagggcaaatgtgtgggcacggtggtttgtaaaatgggggaac |
376 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32443527 |
ataagggtaaatgtgtgggcacggtggtttgtaaaatgggggaac |
32443483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University