View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_42 (Length: 386)

Name: NF13777_low_42
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_42
NF13777_low_42
[»] chr4 (11 HSPs)
chr4 (23-375)||(21833636-21834006)
chr4 (177-298)||(1755035-1755156)
chr4 (193-298)||(641483-641588)
chr4 (185-326)||(3438082-3438223)
chr4 (129-298)||(55908104-55908273)
chr4 (142-326)||(1600930-1601114)
chr4 (28-76)||(1601177-1601225)
chr4 (142-254)||(53761252-53761364)
chr4 (27-76)||(371298-371347)
chr4 (185-298)||(547470-547583)
chr4 (22-74)||(8183616-8183668)
[»] chr6 (2 HSPs)
chr6 (124-362)||(6588700-6588941)
chr6 (201-369)||(6416446-6416614)
[»] chr3 (3 HSPs)
chr3 (142-332)||(51763835-51764025)
chr3 (202-369)||(13470184-13470351)
chr3 (220-361)||(514192-514333)
[»] chr1 (3 HSPs)
chr1 (124-298)||(19467876-19468050)
chr1 (201-298)||(17352198-17352295)
chr1 (32-74)||(7554870-7554912)
[»] chr5 (5 HSPs)
chr5 (127-369)||(28532191-28532439)
chr5 (177-298)||(32268029-32268150)
chr5 (142-375)||(41888937-41889173)
chr5 (184-289)||(41900966-41901071)
chr5 (28-76)||(41900804-41900852)
[»] chr7 (3 HSPs)
chr7 (142-352)||(10169525-10169735)
chr7 (142-352)||(10177050-10177260)
chr7 (124-375)||(10615067-10615318)
[»] chr2 (1 HSPs)
chr2 (129-298)||(1037040-1037209)
[»] chr8 (1 HSPs)
chr8 (184-244)||(27922699-27922759)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 23 - 375
Target Start/End: Original strand, 21833636 - 21834006
Alignment:
Q  23 aggcattgcttcagctctcctcgagagaccaacattgagttctttatccttttctagtagtagcgcttatgtcataccagacttcgctgcttcatattt- 121  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||  ||||| ||| |||||| || |||||| || |||     
T  21833636 aggcattgcttcagctctccgtgagagaccaacattgagttctttatccttttctggtagtagcagttatggcatgccagacatcactgctttatgtttt 21833735  T
Q  122 -----------------atattttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactct 204  Q
                     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21833736 attggcttcactgcttcatattttattggctcattagtgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactct 21833835  T
Q  205 actctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21833836 actctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaaatgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtca 21833935  T
Q  305 tggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21833936 tggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcat 21834006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 1755156 - 1755035
Alignment:
Q  177 tctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatg 276  Q
    |||||| |||||||||||||| | || ||||||||||||| | || |||||||||| | ||||||||| ||| || ||||||||||||||||||||||||    
T  1755156 tctttgaatatctcggatgagctgctgtactctattgcaatgaaaagtcttcctttgaagaggcttgtgcttggacattgcaccggctatagttatgatg 1755057  T
Q  277 gaatcttttgtttgttatccaa 298  Q
    |||||   ||||||||||||||    
T  1755056 gaatccgatgtttgttatccaa 1755035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 641588 - 641483
Alignment:
Q  193 atgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgtt 292  Q
    ||||||| |||| ||||||||||| | |||| |||||||| ||||| ||||||||  | |||||||||||||||| ||||||||||||||| ||||||||    
T  641588 atgagtttctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgtt 641489  T
Q  293 atccaa 298  Q
    ||||||    
T  641488 atccaa 641483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 326
Target Start/End: Original strand, 3438082 - 3438223
Alignment:
Q  185 tatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttt 284  Q
    |||| ||||||| ||||| | |||||||||||  | |||||||||||| |  ||||||||||| |  |||||||||||||||||||||| || |||||||    
T  3438082 tatcccggatgaattactttcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttt 3438181  T
Q  285 tgtttgttatccaaaggtcatggtgtccaacatttggatctt 326  Q
    | | ||||||||||  ||||  || | |||||||||||||||    
T  3438182 tctctgttatccaagtgtcaatgtatacaacatttggatctt 3438223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 298
Target Start/End: Original strand, 55908104 - 55908273
Alignment:
Q  129 attggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttc 228  Q
    |||||||| ||  |||||||||| || || |||||||||| ||||   ||||||   ||||||||||| || || |  |||||||||| || ||||||||    
T  55908104 attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgtctttgcgcatctcggatgaattgcttttttctattgcaatgggaggtcttc 55908203  T
Q  229 ctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 298  Q
    |||| |  || |||||||| | ||||||||||||||||| ||||| |||||| |  | ||||||||||||    
T  55908204 ctttgagaagacttgtcctccaaaattgcaccggctataattatgttggaatatactctttgttatccaa 55908273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 1601114 - 1600930
Alignment:
Q  142 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 241  Q
    ||||||||||||||||||||||||||   |||   | || |  |||||||||| |||| |||| ||||||||||| ||||  || |||||| | ||||||    
T  1601114 tgagtttgaagggtttgacttgtcttgaattgtcctattggcgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggct 1601015  T
Q  242 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatctt 326  Q
    || |||   | ||| ||| ||||||||||||  |||| |  || |||||||||||||  ||||  || |||||||||||| ||||    
T  1601014 tgacctcgcatatttcactggctatagttatattggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttctt 1600930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 1601225 - 1601177
Alignment:
Q  28 ttgcttcagctctcctcgagagaccaacattgagttctttatccttttc 76  Q
    ||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 53761252 - 53761364
Alignment:
Q  142 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 241  Q
    ||||||||||||||||||||| ||||| |||||    |||    || || ||| |||| |||||||||||||||| |||| |||||||||| || || ||    
T  53761252 tgagtttgaagggtttgacttctcttaatttgcagcatttaggaatttcagataagttgctctactctattgcaaaggaatgtcttcctttgacaagtct 53761351  T
Q  242 tgtccttcgaaat 254  Q
    |||||||| ||||    
T  53761352 tgtccttcaaaat 53761364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 371347 - 371298
Alignment:
Q  27 attgcttcagctctcctcgagagaccaacattgagttctttatccttttc 76  Q
    |||||||| ||||||||  |||||||||||||||  ||||||||||||||    
T  371347 attgcttctgctctccttcagagaccaacattgacctctttatccttttc 371298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 547583 - 547470
Alignment:
Q  185 tatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttt 284  Q
    ||||||||||  ||| |||| ||||||||||| ||||| | ||||||| |  | ||||||||| | ||||||   |||||||||||||| |||||| | |    
T  547583 tatctcggatatgttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatct 547484  T
Q  285 tgtttgttatccaa 298  Q
    ||||| || |||||    
T  547483 tgttttttgtccaa 547470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 8183616 - 8183668
Alignment:
Q  22 caggcattgcttcagctctcctcgagagaccaacattgagttctttatccttt 74  Q
    ||||||||||||| ||  | || ||||||||||||||||| ||||||||||||    
T  8183616 caggcattgcttctgcattacttgagagaccaacattgaggtctttatccttt 8183668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 124 - 362
Target Start/End: Original strand, 6588700 - 6588941
Alignment:
Q  124 attttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaagg 223  Q
    |||| |||| ||||||  ||||||||||| |||||||||||||| |||||  | ||||| ||||||| |||||||| |||||| ||||||||||| || |    
T  6588700 atttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagttgctctacactattgcaaggaaacg 6588799  T
Q  224 tcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcat---ggtgtccaacatttg 320  Q
    ||||||||| || || ||||| ||   | ||||  | |||  |  |||| ||||| |||||| |||||||||||   |||||    || |||||||||||    
T  6588800 tcttcctttgacaagacttgtactcaaatattgttctggccgttattataatggactcttttatttgttatccatgtgtcataaaagtttccaacatttg 6588899  T
Q  321 gatcttgaagataacatgtttctgaatgatcaacatgttgtc 362  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  6588900 gatcttgaagataataggtttctgaatgatcaacatgttgtc 6588941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 369
Target Start/End: Complemental strand, 6416614 - 6416446
Alignment:
Q  201 ctctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccgg---ctatagttatgatggaatcttttgtttgttatcca 297  Q
    ||||||| |||||||||||||||||||||||| |||||| ||  ||| ||| ||||    ||   | |||||| || |||||| ||| ||||||||||||    
T  6416614 ctctactgtattgcaagggaaggtcttcctttgacgaggtttaccctccgacattgttttggcccccatagttctgctggaatatttcgtttgttatcca 6416515  T
Q  298 aaggtcatggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgt 369  Q
    |  |||| ||  ||||||||||| ||||||||  |     |||||| |||||||||||||||||||| ||||    
T  6416514 agtgtcaaggcatccaacatttgaatcttgaactt---tcgtttcttaatgatcaacatgttgtccaattgt 6416446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 332
Target Start/End: Original strand, 51763835 - 51764025
Alignment:
Q  142 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 241  Q
    ||||||||||||||||||||| ||||  ||||     |||| | ||||| |||||||| |||||||| ||||||||||||||||||| ||| |  |||||    
T  51763835 tgagtttgaagggtttgacttctcttgatttgaagcgtttgaaaatctctgatgagttgctctactcgattgcaagggaaggtcttcttttgaaaaggct 51763934  T
Q  242 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagat 332  Q
    |||||||| || |||||| ||||||||||||| ||||||| |||||||| |||||||  ||||  || |  |||||||||||||| |||||    
T  51763935 tgtccttcaaatttgcacgggctatagttatgctggaatcatttgtttggtatccaactgtcaacgtttgaaacatttggatcttcaagat 51764025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 13470184 - 13470351
Alignment:
Q  202 tctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccgg---ctatagttatgatggaatcttttgtttgttatccaa 298  Q
    |||||| |||||||||||||||||||||||| |||||| ||| ||| ||| ||||    ||   | ||||||||| |||||| ||| |||||||||||||    
T  13470184 tctactgtattgcaagggaaggtcttcctttgacgaggtttgccctccgacattgttttggcccccatagttatgctggaatatttcgtttgttatccaa 13470283  T
Q  299 aggtcatggtgtccaacatttggatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgt 369  Q
      |||| ||  |||||||||| ||||||||   |    ||||||||||||||||||||||| |||| ||||    
T  13470284 gtgtcaaggcatccaacatttagatcttgagctt---ttgtttctgaatgatcaacatgttctccaattgt 13470351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 361
Target Start/End: Original strand, 514192 - 514333
Alignment:
Q  220 aaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacattt 319  Q
    ||||||||||||||| ||| ||||| || || | ||| ||||||||  | |||||||||||||||| ||||||||||||| || |  |  | ||||||||    
T  514192 aaggtcttcctttaaggagacttgtgctccgtagttgtaccggctacggctatgatggaatcttttctttgttatccaaatgtaaatggatacaacattt 514291  T
Q  320 ggatcttgaagataacatgtttctgaatgatcaacatgttgt 361  Q
    | ||||| |||||  | | || || |||||||||||||||||    
T  514292 gaatcttcaagatgcccttttcctcaatgatcaacatgttgt 514333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 124 - 298
Target Start/End: Original strand, 19467876 - 19468050
Alignment:
Q  124 attttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaagg 223  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||| || | | | | || ||||||| |||||  | ||||||||||||||| |||||||    
T  19467876 attttattgactcattgctgagtttgaagggtttgacttctcttacttggtggtttctgaatatctctgatgaaatgctctactctattgcacgggaagg 19467975  T
Q  224 tcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 298  Q
     || ||||| ||||||||||||||   | |||||   ||| |||| |||| ||||||||||||||||||||||||    
T  19467976 gctacctttgacgaggcttgtcctcaaatattgctttggccatagctatgctggaatcttttgtttgttatccaa 19468050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 17352295 - 17352198
Alignment:
Q  201 ctctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 298  Q
    |||| ||||||||||| ||| ||| ||||||| | ||| |||||||||| | ||| ||| ||||| ||||||| |||||  |||| ||||||||||||    
T  17352295 ctctcctctattgcaaaggagggttttcctttcaggagacttgtccttcaatattccactggctacagttatgctggaactttttctttgttatccaa 17352198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 7554912 - 7554870
Alignment:
Q  32 ttcagctctcctcgagagaccaacattgagttctttatccttt 74  Q
    |||||||||||  ||||||||||||||||| ||||||||||||    
T  7554912 ttcagctctccatgagagaccaacattgaggtctttatccttt 7554870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 369
Target Start/End: Complemental strand, 28532439 - 28532191
Alignment:
Q  127 ttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtct 226  Q
    |||||| ||||||  ||||||| |||||||||||||||||| |||||  || |||  |||| || |||||||| |||||| |||||||||||| ||||||    
T  28532439 ttattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaaggggaggtct 28532340  T
Q  227 tcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa------aggtcatggtgtccaacatttg 320  Q
    |||||| |  | |||||||||   |||| ||   |||||||||||||| ||| |||||||||||||||||||      | |||| ||| ||| |||||||    
T  28532339 tcctttgataaagcttgtcctaaaaaatcgctggggctatagttatgacggactcttttgtttgttatccaagtgtcgacgtcaaggtttccgacatttg 28532240  T
Q  321 gatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgt 369  Q
     || ||| |  ||  | |||||||||||||||||||||| |||||||||    
T  28532239 tatattggacttagtaagtttctgaatgatcaacatgttatccagttgt 28532191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 32268150 - 32268029
Alignment:
Q  177 tctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatg 276  Q
    |||||| ||||||| |||||||| |||| ||||||||||    || |||||||||| ||||||||||| || | | |||||||||||||||| |||  ||    
T  32268150 tctttgaatatctcagatgagttgctctcctctattgcataccaatgtcttcctttgacgaggcttgttctccaagattgcaccggctatagctattctg 32268051  T
Q  277 gaatcttttgtttgttatccaa 298  Q
    ||||| ||| |||  |||||||    
T  32268050 gaatcctttctttactatccaa 32268029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 375
Target Start/End: Original strand, 41888937 - 41889173
Alignment:
Q  142 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggc- 240  Q
    |||||||||||   ||||||||||||  ||||  ||||||| ||||||| |||||| | || | ||||||||||| | ||||| ||| ||| || |||      
T  41888937 tgagtttgaagtacttgacttgtcttgatttgttttctttgaatatctccgatgagatgctttcctctattgcaatgcaaggttttcttttgactaggtg 41889036  T
Q  241 -ttgtcctt-cgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatg 338  Q
     || ||| | | |||||||||||||| |||||||| |||||||||||||||  |||||||  || |   | |||||| |||||||||| || |||   |     
T  41889037 gttctccctacaaaattgcaccggctttagttatgctggaatcttttgtttactatccaagtgtgaacatatccaacttttggatcttcaaaatattgtt 41889136  T
Q  339 tttctgaatgatcaacatgttgtccagttgtattcat 375  Q
    ||||||||| || ||||||||||  |||||| |||||    
T  41889137 tttctgaatcataaacatgttgtggagttgtcttcat 41889173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 41900966 - 41901071
Alignment:
Q  184 atatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatctt 283  Q
    ||||||| |||| ||| |||  |||||||||||   ||||||| ||||| || |||||||| || | |||||||||||| |||||||||  ||||||  |    
T  41900966 atatctcagatgtgtttctcatctctattgcaatccaaggtctacctttgactaggcttgttctccaaaattgcaccggttatagttattctggaattat 41901065  T
Q  284 ttgttt 289  Q
    ||||||    
T  41901066 ttgttt 41901071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 41900804 - 41900852
Alignment:
Q  28 ttgcttcagctctcctcgagagaccaacattgagttctttatccttttc 76  Q
    ||||||| ||||||| | |||||||||||||||| |||||||| |||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatcattttc 41900852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 352
Target Start/End: Original strand, 10169525 - 10169735
Alignment:
Q  142 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 241  Q
    ||||||||||||||||||||| ||||  |||| | ||| || ||||||| |||||  | |||||||||||||| ||||||||||| ||||| ||||||||    
T  10169525 tgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcgagggaaggtctacctttgacgaggct 10169624  T
Q  242 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 341  Q
    || |||  || |||||   | ||| || |||| ||||||||||||||||| ||| ||  |||  ||| | |||||  ||||||||||| ||  ||| ||     
T  10169625 tgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcgaggtttgcaacacatggatcttgaacatgccattttc 10169724  T
Q  342 ctgaatgatca 352  Q
    |||||||||||    
T  10169725 ctgaatgatca 10169735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 352
Target Start/End: Original strand, 10177050 - 10177260
Alignment:
Q  142 tgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggct 241  Q
    ||||||||||||||||||||| ||||  |||| | ||| || ||||||| |||||  | |||||||||||||| ||||||||||| ||||| ||||||||    
T  10177050 tgagtttgaagggtttgacttctctttctttgagatctctggatatctctgatgaaatgctctactctattgcgagggaaggtctacctttgacgaggct 10177149  T
Q  242 tgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttggatcttgaagataacatgttt 341  Q
    || |||  || |||||   | ||| || |||| ||||||||||||||||| ||| ||  |||  ||| | |||||  ||||||||||| ||  ||| ||     
T  10177150 tgccctcagatattgcttggactaaagctatgctggaatcttttgtttgtcatctaagtgtcgaggtttgcaacacatggatcttgaacatgccattttc 10177249  T
Q  342 ctgaatgatca 352  Q
    |||||||||||    
T  10177250 ctgaatgatca 10177260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 375
Target Start/End: Complemental strand, 10615318 - 10615067
Alignment:
Q  124 attttattggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaagg 223  Q
    ||||||||| ||||||  ||||||||||||| ||||||||||||  |||||  | | || |||||||  || | ||  | ||||||||||||||||  ||    
T  10615318 attttattgactcattggtgagtttgaagggcttgacttgtcttgatttgcagtttatgaatatctcaaataacttgttttactctattgcaagggtggg 10615219  T
Q  224 tcttcctttaacgaggcttgtccttcgaaattgcaccggcta---tagttatgatggaatcttttgtttgttatccaaaggtcatggtgtccaacatttg 320  Q
    ||||||||| |||||| ||  ||| ||| ||||   |||| |   |||||||| |||||||| |||||| ||||||||  |||| ||  |||||||||||    
T  10615218 tcttcctttgacgaggtttaccctccgacattgtttcggccaccatagttatgctggaatctattgtttattatccaagtgtcaaggcttccaacatttg 10615119  T
Q  321 gatcttgaagataacatgtttctgaatgatcaacatgttgtccagttgtattcat 375  Q
    |||||||||  |     ||||||||||||||||||||||||||| |||| |||||    
T  10615118 gatcttgaactt---ccgtttctgaatgatcaacatgttgtccaattgtcttcat 10615067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 298
Target Start/End: Original strand, 1037040 - 1037209
Alignment:
Q  129 attggctcattactgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatctcggatgagttactctactctattgcaagggaaggtcttc 228  Q
    |||||||| ||  |||||||||| || || |||||||||| ||||   ||||||   || |||||||| || || |  |||||||||| || ||||||||    
T  1037040 attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcatctttgcgcatttcggatgaattgcttttttctattgcaatgggaggtcttc 1037139  T
Q  229 ctttaacgaggcttgtccttcgaaattgcaccggctatagttatgatggaatcttttgtttgttatccaa 298  Q
    |||| |  || |||||||| | |||||||||| |||||| ||||| |||||| |  | ||||||||||||    
T  1037140 ctttgagaagacttgtcctccaaaattgcaccagctataattatgttggaatatactctttgttatccaa 1037209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 27922759 - 27922699
Alignment:
Q  184 atatctcggatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgt 244  Q
    |||||||||||||||| |||| ||||||||| |  ||| |||| ||||| |||||||||||    
T  27922759 atatctcggatgagttgctctcctctattgccaccgaacgtctacctttgacgaggcttgt 27922699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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