View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_43 (Length: 386)
Name: NF13777_low_43
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 44623023 - 44622647
Alignment:
| Q |
1 |
ttctacaatacctgcttcctcaaaaatatgaattaatttctacaatagaagataacttagtgaatttgtgactgattgaacaaattaattaacaaattgg |
100 |
Q |
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| T |
44623023 |
ttctacaatacctgcttcctcaaaaatatgaattaatttctacaatagaagataacttagtgaatttgtgactgattgaacaaattaattaacaaattgg |
44622924 |
T |
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| Q |
101 |
ttacttggcgtggcaggtttgagttgggactagagaagccagatccgagaagagcattgtatagtgcaatgacaattgctattgcttacgtattgggtgg |
200 |
Q |
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| T |
44622923 |
ttacttggcgtggcaggtttgagttgggactagagaagccagatccgagaagagcattgtatagtgcaatgacaattgctattgcttacgtattgggtgg |
44622824 |
T |
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| Q |
201 |
aattgttcctctcattccttacatgttcattccaaatgcatcagaggctgttcttgtttcagtggtggttacattgattgctttgcttatctttggcttt |
300 |
Q |
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| T |
44622823 |
aattgttcctctcattccttacatgttcattcgaaatgcatcagaggctgttcttgtttcagtggtggttacattgattgctttgcttatctttggcttt |
44622724 |
T |
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| Q |
301 |
gtcaagggatccttcaccggcaacaaaccaatcaggagtgctttggaaactgctctaattggtgccattgtctctgc |
377 |
Q |
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| T |
44622723 |
gtcaagggatccttcaccggcaacaagccaatcaggagtgctttggaaactgctctaattggtgccattgcctctgc |
44622647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 76 - 370
Target Start/End: Complemental strand, 44634430 - 44634133
Alignment:
| Q |
76 |
ttgaacaaattaattaacaaattggttact---tggcgtggcaggtttgagttgggactagagaagccagatccgagaagagcattgtatagtgcaatga |
172 |
Q |
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| T |
44634430 |
ttgaacaaattaattaacaaattgcttactcgatggcatggcagatttgagctgggactagaaaagccagatccaatgagagcattgtgcagtgcaatga |
44634331 |
T |
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| Q |
173 |
caattgctattgcttacgtattgggtggaattgttcctctcattccttacatgttcattccaaatgcatcagaggctgttcttgtttcagtggtggttac |
272 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |
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| T |
44634330 |
caattgctattgcttacatattgggtggaattgttcctctcattccttacatgttcattccaaatgcatcagaggctgttcttttttcagtaatttttac |
44634231 |
T |
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| Q |
273 |
attgattgctttgcttatctttggctttgtcaagggatccttcaccggcaacaaaccaatcaggagtgctttggaaactgctctaattggtgccattg |
370 |
Q |
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| T |
44634230 |
attgattgctttgcttatctttggctttgtcaagggatgcttcaccggcagcaaacctatcaaaagtgctttcgaaactgctctcatcggcgccattg |
44634133 |
T |
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