View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_44 (Length: 382)
Name: NF13777_low_44
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 23467205 - 23467553
Alignment:
| Q |
20 |
gcaacttttcttaagaaactgtactctattcgaatctcttgaccttctgatttcaactgtgattccaatattctccgtctgcgtttgtagattaagctga |
119 |
Q |
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| T |
23467205 |
gcaacctttcttaagaaactgtactctattcgaatctcttgaccttctgatttcaactgtgattccaatattctccgtctgcgtttgtagattaagctga |
23467304 |
T |
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| Q |
120 |
gaaaaacaaaaccaaatactgcaaggatcacagcaacgccagcgccacagatgaggaagaaagcctttgacagctttaacaagatacgagcaatgattat |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
23467305 |
gaaaaacaaaaccaaatactgcaaggatcacagccacgccagcgccacagatgaggaagaaagcctttgacagctttaacaaaatacgtgcaatgattat |
23467404 |
T |
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| Q |
220 |
gatgataatcagtgttatcactgatatagcagcgagtatattcactctcttatcttccatatcagaacttcacattttatgttgtatgataaagatggaa |
319 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23467405 |
gatgataatcagtgttaccactgatatagcagcgattatattcactctcttatcttccatatcagaacttcacattttatgttttatgataaagatggaa |
23467504 |
T |
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| Q |
320 |
tggaagataaaagataaattattagatttctcacctttgtaatattctt |
368 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
23467505 |
tggaagataaaagttgaattattagatttctcacctttgtaatattctt |
23467553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 46789205 - 46789141
Alignment:
| Q |
20 |
gcaacttttcttaagaaactgtactctattcgaatctcttgaccttctgatttcaactgtgattc |
84 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
46789205 |
gcaacttttcttaagaaactgtactctattcgaagctctcttccttctgatttcaactgtgattc |
46789141 |
T |
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