View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_low_45 (Length: 380)
Name: NF13777_low_45
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_45 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 27075644 - 27075995
Alignment:
| Q |
13 |
atacttccagatgtgtttgtcgctgctgccctggttgaaaagttgcctagttcatgggacgattacaagcaacagctgaaacataaacacaagcagatgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27075644 |
atacttccagatgtgtttgtcgctgctgccctggttgaaaagttgcctagttcatgggacgattacaagcaacagctgaaacataaacacaagcagatgt |
27075743 |
T |
|
| Q |
113 |
ctcttaatgatctcatcaggcacataatcattgaagacaccagcaggaaggaatgcggagctgcacgtgccaaagctttggaatcgagagcaaatctgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075744 |
ctcttaatgatctcatcaggcacataatcattgaagacaccagcaggaaggaatgcggagctgcacgtgccaaagctttggaatcgagagcaaatctgat |
27075843 |
T |
|
| Q |
213 |
ccaaaacaatgcgcgtaaacaacagaggtatgagaacaaatctgatcatgctctcaaagtaactaaccctaatttcaaagcaaacctaggtgagtgctat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27075844 |
ccaaaacaatgcgcgtaaacaacagaggtatgagaacaaatctgatcatgctctcaaagtaactaaccctaatttcaaagcaaacctaggtgagtgctat |
27075943 |
T |
|
| Q |
313 |
gtgtgtggaaagaaaggacataaagcatatcactgtagatatcggaaagtga |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27075944 |
gtgtgtggaaagaaaggacataaagcatatcactgcagatatcggaaagtga |
27075995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 26050672 - 26050872
Alignment:
| Q |
13 |
atacttccagatgtgtttgtcgctgctgccctggttgaaaagttgcctagttcatgggacgattacaagcaacagctgaaacataaacacaagcagatgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26050672 |
atacttccagatgtgtttgtcgctgctgccctggttgaaaagttgcctagttcatgggacgattacaagcaacagctgaaacataaacacaagcagatgt |
26050771 |
T |
|
| Q |
113 |
ctcttaatgatctcatcaggcacataatcattgaagacaccagcaggaaggaatgcggagctgcacgtgccaaagctttggaatcgagagcaaatctgat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
26050772 |
ctcttaatgatctcatcaggcacataatcattgaagacaccagcaggaaggaatgcggagctgcacgtgccaaagctttggaatccagaacaaatctgat |
26050871 |
T |
|
| Q |
213 |
c |
213 |
Q |
| |
|
| |
|
|
| T |
26050872 |
c |
26050872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 245 - 364
Target Start/End: Original strand, 26050858 - 26050977
Alignment:
| Q |
245 |
agaacaaatctgatcatgctctcaaagtaactaaccctaatttcaaagcaaacctaggtgagtgctatgtgtgtggaaagaaaggacataaagcatatca |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26050858 |
agaacaaatctgatcatgctctcaaagtaactaaccctaatttcaaagcaaacctaggtgagtgctatgtgtgtggaaagaaaggacataaagcatatca |
26050957 |
T |
|
| Q |
345 |
ctgtagatatcggaaagtga |
364 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
26050958 |
ctgcagatatcggaaagtga |
26050977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 36610659 - 36611010
Alignment:
| Q |
13 |
atacttccagatgtgtttgtcgctgctgccctggttgaaaagttgcctagttcatgggacgattacaagcaacagctgaaacataaacacaagcagatgt |
112 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||||||||||||||| |||||| | |||||||||||||| ||||||||||| |||||||| |||| |
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|
| T |
36610659 |
atacttccagacgtgtttgtcgctgatgccttggttgaaaagttgcccgactcatggaatgattacaagcaacaactgaaacataagcacaagcaaatgt |
36610758 |
T |
|
| Q |
113 |
ctcttaatgatctcatcaggcacataatcattgaagacaccagcaggaaggaatgcggagctgcacgtgccaaagctttggaatcgagagcaaatctg-- |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||||| |||||| |
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|
| T |
36610759 |
ttcttaatgatctcatcag--acataatcattgaagacaccagcagaaaggaatgtggagctgctcgagccaaagctttggagtcgagagaaaatctata |
36610856 |
T |
|
| Q |
211 |
atccaaaacaatgcgcgtaaacaacagaggtatgagaacaaatctgatcatgctctcaaagtaactaaccctaatttcaaagcaaacctaggtgagtgct |
310 |
Q |
| |
|
|||||||||||| | || ||||||||||| ||||| || ||| ||||||||| |||| ||||||||||| ||||| ||| ||||||||| |||| |
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|
| T |
36610857 |
atccaaaacaatacacgcaaacaacagagatatgaaaataaaaatgatcatgccctcagagtaactaacctcaattttaaattgaacctaggttgttgct |
36610956 |
T |
|
| Q |
311 |
atgtgtgtggaaagaaaggacataaagcatatcactgtagatatcggaaagtga |
364 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||| |||||||||||| |
|
|
| T |
36610957 |
atgtgtgtggaaagaaaggtcataaagcatatcattgcagacatcggaaagtga |
36611010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 36611371 - 36611239
Alignment:
| Q |
13 |
atacttccagatgtgtttgtcgctgctgccctggttgaaaagttgcctagttcatgggacgattacaagcaacagctgaaacataaacacaagcagatgt |
112 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||||||||| || || | |||| | |||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
36611371 |
atacttccagacgtgtttgtcgctagtgccttggttgaaaacttccccgactaatggaatgattacaagcaacagctgaaacataagcacaagcacatgt |
36611272 |
T |
|
| Q |
113 |
ctcttaatgatctcatcaggcacataatcattg |
145 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| |
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|
| T |
36611271 |
tttttaatgatctcatcagacacataatcattg |
36611239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 36611240 - 36611135
Alignment:
| Q |
174 |
tgcacgtgccaaagctttggaatcgagagcaaatctgatccaaaacaatgcgcgtaaacaacagaggtatgagaacaaatctgatcatgctctcaaagta |
273 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||| || ||||| |||||| | || ||| |||||| ||||| || ||| |||||||||| ||| |||| |
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|
| T |
36611240 |
tgcacgagccaaagctttgaactcgagagcaaacctaatccacaacaatacacgcaaagaacaga--tatgaaaataaaactgatcatgccctcggagta |
36611143 |
T |
|
| Q |
274 |
actaaccc |
281 |
Q |
| |
|
|||||||| |
|
|
| T |
36611142 |
actaaccc |
36611135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 15 - 364
Target Start/End: Complemental strand, 14635891 - 14635542
Alignment:
| Q |
15 |
acttccagatgtgtttgtcgctgctgccctggttgaaaagttgcctagttcatgggacgattacaagcaacagctgaaacataaacacaagcagatgtct |
114 |
Q |
| |
|
||||| |||||||||||||| || ||| ||||||||||||| |||| | |||| | |||||||||||||| |||||||||| |||||||| |||||| |
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|
| T |
14635891 |
acttctagatgtgtttgtcgttggtgcattggttgaaaagtttcctaacttatggaatgattacaagcaacaaatgaaacataagcacaagcatatgtct |
14635792 |
T |
|
| Q |
115 |
cttaatgatctcatcaggcacataatcattgaagacaccagcaggaaggaatgcggagctgcacgtgccaaagctttggaatcgagagcaaatctgatcc |
214 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||||||| || ||||| | ||| ||||| |||||||||||||| || ||||||||||| |||| |
|
|
| T |
14635791 |
cttaatgatctcatcaggcacgtaaacattgaaggcaccagcaaaaaagaatgtgaagccgcacgagccaaagctttggagtcaagagcaaatctaatcc |
14635692 |
T |
|
| Q |
215 |
aaaacaatgcgcgtaaacaacagaggtatgagaacaaatctgatcatgctctcaaagtaactaaccctaatttcaaagcaaacctaggtgagtgctatgt |
314 |
Q |
| |
|
|||||||| || | |||||||| ||||||| ||||||| |||||||||||||||||||||||| ||||| || |||||||||||| | |||||||| |
|
|
| T |
14635691 |
aaaacaatacgtgcaaacaacaagggtatgaaaacaaatatgatcatgctctcaaagtaactaaaatcaattttaaggcaaacctaggttactgctatgt |
14635592 |
T |
|
| Q |
315 |
gtgtggaaagaaaggacataaagcatatcactgtagatatcggaaagtga |
364 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| |||| || |||||||| |
|
|
| T |
14635591 |
gtgtggaaagaaagaacataaaacatatcactgcagatttcagaaagtga |
14635542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 2929654 - 2929598
Alignment:
| Q |
84 |
acagctgaaacataaacacaagcagatgtctcttaatgatctcatcaggcacataat |
140 |
Q |
| |
|
|||||| |||||||| ||||| || |||||||||| ||||||||||| ||||||||| |
|
|
| T |
2929654 |
acagctaaaacataatcacaatcatatgtctcttattgatctcatcaagcacataat |
2929598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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