View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_46 (Length: 379)
Name: NF13777_low_46
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 113 - 360
Target Start/End: Complemental strand, 36468679 - 36468432
Alignment:
| Q |
113 |
aagaatttaatttgtgcacaagttgtttttaacaattgaagattgaacgaaagcaaaacaagtttatgaaaataagttaaatgagttagagttaaaatca |
212 |
Q |
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| T |
36468679 |
aagaatttaatttgtgcacaagttgtttttaacaattgaagattgaacgaaagcaaaacaagtttatgaaaataagttaaatgagttagagttaaaatca |
36468580 |
T |
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| Q |
213 |
ggttacaaacaaaatatttctaattcatttatatcgtgaaagagttgcacaagttgtttatattaaaaccattgaagataaataagggtttttggttttt |
312 |
Q |
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| T |
36468579 |
ggttacaaacaaaatatttctaattcatttatatcgtgaaagagttgcagaagttgtttatattaataccattgaagataaataagggtttttggttttt |
36468480 |
T |
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| Q |
313 |
cgtgtgtatattaggggagttagaatgttagaacttggaaatggaggg |
360 |
Q |
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| T |
36468479 |
cgtgtgtatattaggggagttagaatgttagaacatggaaatggaggg |
36468432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 36470006 - 36469936
Alignment:
| Q |
25 |
taagatgctaaaatgtgtaaatgacgctcttatttaaaaagttggatgagcgagaaaggtatatttccttt |
95 |
Q |
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| T |
36470006 |
taagatgctaaaatgtgtaaatgacgctcttatttaaaaagttggctgagcgagaaagatatatttccttt |
36469936 |
T |
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