View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_47 (Length: 376)
Name: NF13777_low_47
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 49115337 - 49114984
Alignment:
| Q |
11 |
atgaagcacaatactgtttcaaatccttgaaaatatctcgtgatacttggttcgacaacgaattctattcagtaatctctcttaatgagtttataatgtc |
110 |
Q |
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| T |
49115337 |
atgaagcacaatactgtttcaaatccttgaaaatatctcgtgatacttggttcgacaacgaattctattcggtaatctctcttaatgagtttataatgtc |
49115238 |
T |
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| Q |
111 |
attatactgtgttacttattacatatgcatcaaacatgaaacacgtaaatttacatgtatcatgtttgatggagtataaaagatctgatattaaaaaatg |
210 |
Q |
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| T |
49115237 |
attatactgtgttacttattacatatgcatcaaacatgaaacacgtaaatttacgtgtttcatgtttgatggagtataaaagatctgatattaaaaaatg |
49115138 |
T |
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| Q |
211 |
at--attgttaacagagttattttatgtgggactcttttatgactggtgtggctgtctccatcatgagtaaacccaataatcacaaaggagataatgaat |
308 |
Q |
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| T |
49115137 |
attcattgttaacagagttattttatgtgggactcttttatgactggtgtggctgtctccatcatgagtaaacccaataatcacaaaggagataatgaat |
49115038 |
T |
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| Q |
309 |
ttgcagaaatggagtatatgaacataactgtaattacttctaataaaccatatg |
362 |
Q |
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| T |
49115037 |
ttgcagaaatggagtatatgaacataactgtaattacttctaataaaccatatg |
49114984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 218 - 362
Target Start/End: Complemental strand, 49103090 - 49102946
Alignment:
| Q |
218 |
taacagagttattttatgtgggactcttttatgactggtgtggctgtctccatcatgagtaaacccaataatcacaaaggagataatgaatttgcagaaa |
317 |
Q |
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| T |
49103090 |
taacagagttatttcatgtgggactctttcatggctggtatagccgtgtccatcatgagtaaatccaataaccataaaggagaaaatgaatttgctgaaa |
49102991 |
T |
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| Q |
318 |
tggagtatatgaacataactgtaattacttctaataaaccatatg |
362 |
Q |
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| T |
49102990 |
tggagtatatgaacattactgtaattgcctcaaataaaccatatg |
49102946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 49103273 - 49103185
Alignment:
| Q |
17 |
cacaatactgtttcaaatccttgaaaatatctcgtgatacttggttcgacaacgaattctattcagtaatctctcttaatgagtttata |
105 |
Q |
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| T |
49103273 |
cacaatattgtttcaaatccttgaaaataactcgtgatacttggtttgatgatgaattctattcggtaatatctcttaattaatttata |
49103185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 49115167 - 49115210
Alignment:
| Q |
138 |
catcaaacatgaaacacgtaaatttacatgtatcatgtttgatg |
181 |
Q |
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| T |
49115167 |
catcaaacatgaaacacgtaaatttacgtgtttcatgtttgatg |
49115210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 362
Target Start/End: Original strand, 6957113 - 6957254
Alignment:
| Q |
221 |
cagagttattttatgtgggactcttttatgactggtgtggctgtctccatcatgagtaaacccaataatcacaaaggagataatgaatttgcagaaatgg |
320 |
Q |
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|||||||||||||||||||||||||| | | |||||| || || || |||||||| || | |||| | ||||| || ||||||||||| ||||||| |
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| T |
6957113 |
cagagttattttatgtgggactctttcacaagtggtgtagcagtttcaatcatgaggaactctaatagaaagaaaggggaaaatgaatttgctgaaatgg |
6957212 |
T |
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| Q |
321 |
agtatatgaacataactgtaattacttctaataaaccatatg |
362 |
Q |
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| T |
6957213 |
agtatataaacataactgtaattacttcaaacaaaccttatg |
6957254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 6956764 - 6956816
Alignment:
| Q |
16 |
gcacaatactgtttcaaatccttgaaaatatctcgtgatacttggttcgacaa |
68 |
Q |
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| T |
6956764 |
gcacaatactgtttcaagtccttgaaaatggctcatgatacttggtttgacaa |
6956816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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