View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_48 (Length: 373)
Name: NF13777_low_48
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 6 - 366
Target Start/End: Original strand, 2328616 - 2328976
Alignment:
| Q |
6 |
atgtctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgc |
105 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2328616 |
atgtcaagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgc |
2328715 |
T |
|
| Q |
106 |
cgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2328716 |
cgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatat |
2328815 |
T |
|
| Q |
206 |
caaagctgttcttgttgatccagttccaatttgatcattaatttttatgttttgtgctttatgtttcaagtttgaattagaaaaatgcatgtgtgcttta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2328816 |
caaagctgttcttgttgatccagttccaatttgatcattaatttttatgttttgtgctttatgtttcaagtttgaattagaaaaatgcatgtgtgcttta |
2328915 |
T |
|
| Q |
306 |
tgtgctgcttggttcacaatatttgaacaatttatgctattttgatgtaatacctatgctt |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
2328916 |
tgtgctgcttggttcacaatatttgaacaatttatgctattttgatgtaatatctaggctt |
2328976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 14264928 - 14264683
Alignment:
| Q |
10 |
ctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtt |
109 |
Q |
| |
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|||||||||||||||||||||||||| ||||| | ||||||| |||||||||| | |||| |||||||| ||||||||| ||||||||||| || |
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| T |
14264928 |
ctagggaagctgctattcaagaatgccaaaagagagttgcaatcgcttggaaagatataaacaaagaatgtctaaggccaaccgaagttccaatggattt |
14264829 |
T |
|
| Q |
110 |
tctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaa |
209 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||| |||||| |||| |||||||||| || | | |||||| || ||||| |||| || ||| |
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|
| T |
14264828 |
tctaactcgcgctctcaatttttcgcgttttatggatgtgttttacacagataaagataactatactcatgttgaaggtctcatgaaaacatacattaaa |
14264729 |
T |
|
| Q |
210 |
gctgttcttgttgatccagttccaatttgatcattaatttttatgt |
255 |
Q |
| |
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| || || || |||||| ||||||||||| ||| ||| ||||||| |
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|
| T |
14264728 |
gacgtcctggtggatccaattccaatttgagcatcaatgtttatgt |
14264683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 25834850 - 25835054
Alignment:
| Q |
6 |
atgtctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
25834850 |
atgtctagggaagctgctattcaagaatgccataagggaattgcaattgcttggaaagatataaatgaggaatgtcttaggccaaccaaagttccaatgc |
25834949 |
T |
|
| Q |
106 |
cgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatat |
205 |
Q |
| |
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| ||||| | || |||||||| || |||||||||||||||| |||||||||| |||| || ||||||| |||||||||||| |||||| |||| | |
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| T |
25834950 |
cttttcttattcgtgctctcaatttttcgcgttttatggatgtgaattacaaagataaagacaattacacacattctgaaggacttatgaagaaatatgt |
25835049 |
T |
|
| Q |
206 |
caaag |
210 |
Q |
| |
|
||||| |
|
|
| T |
25835050 |
caaag |
25835054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 31201610 - 31201728
Alignment:
| Q |
53 |
tgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtt |
152 |
Q |
| |
|
||||||||||| | | ||| ||||||| |||| ||||| ||||||||||||| ||||| || ||| ||| || || | |||||||||||||| ||| |
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|
| T |
31201610 |
tgcttggaaagatatgaataaggaatgttttagaccaactgaagttccaatgccttttcttacacgcattctaaatctgtcacgttttatggatgtcgtt |
31201709 |
T |
|
| Q |
153 |
tacaaagatgaagataact |
171 |
Q |
| |
|
|| |||||| ||||||||| |
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|
| T |
31201710 |
tataaagataaagataact |
31201728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 41349369 - 41349259
Alignment:
| Q |
135 |
cgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaagctgttcttgttgatccagttccaa |
234 |
Q |
| |
|
||||| |||||||| ||||| |||||| ||||||||| |||| | |||||||| ||||||||||| || ||| || | ||||||||||| || || | |
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|
| T |
41349369 |
cgtttcatggatgtggtttataaagataaagataactttacacatcctgaaggagaaatgaagtcattcattaaatctttacttgttgatcccgtgccta |
41349270 |
T |
|
| Q |
235 |
tttgatcatta |
245 |
Q |
| |
|
||||| ||||| |
|
|
| T |
41349269 |
tttgagcatta |
41349259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 20622045 - 20621812
Alignment:
| Q |
6 |
atgtctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgc |
105 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||| |||||| |||||||| | ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
20622045 |
atgtcgagagaagctgctattcaagaatgcaaaaatagaatgacaattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttccaatgc |
20621946 |
T |
|
| Q |
106 |
cgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatat |
205 |
Q |
| |
|
| ||| | || | | ||| |||||| |||||||||||||||| ||||||||| | ||||||||||||||| |||| | ||||||||||| | | ||| |
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|
| T |
20621945 |
cttttatgacttgtgttcttaacctttcgcgttttatggatgttgtttacaaaaacgaagataactacacagattctaacagactaatgaagacttgtat |
20621846 |
T |
|
| Q |
206 |
caaagctgttcttgttgatccagttccaatttga |
239 |
Q |
| |
|
|||| || | |||||||| |||||||||||| |
|
|
| T |
20621845 |
taaagaagtgttggttgatcctgttccaatttga |
20621812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 20603056 - 20602823
Alignment:
| Q |
6 |
atgtctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgc |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||| |||||| |||||||| | ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
20603056 |
atgtctagagaagctgctattcaagaatgcaaaaatagaatgacaattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttccaatgc |
20602957 |
T |
|
| Q |
106 |
cgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatat |
205 |
Q |
| |
|
| ||| | | | | |||||| ||| |||||||||||||||| |||||||| | ||||||||||||| |||| | |||||||||||| ||| ||| |
|
|
| T |
20602956 |
cttttatgatttgtgttctcaatctttcgcgttttatggatgttatttacaaaaacaaagataactacacggattctaacggactaatgaagacatttat |
20602857 |
T |
|
| Q |
206 |
caaagctgttcttgttgatccagttccaatttga |
239 |
Q |
| |
|
|||| || | |||||||| |||||||||||| |
|
|
| T |
20602856 |
taaagaagtgttggttgatcctgttccaatttga |
20602823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 17183163 - 17183401
Alignment:
| Q |
9 |
tctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgt |
108 |
Q |
| |
|
||||| |||||| |||||||||||||| |||| | ||| | ||||||||||| | ||||| |||||||||| ||||||||||||||||| || | |
|
|
| T |
17183163 |
tctagagaagcttctattcaagaatgccaaaaaagagttgttaatgcttggaaagatataaatgaagaatgtcttaagccaaccaaagttccaacgcttt |
17183262 |
T |
|
| Q |
109 |
ttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaa |
208 |
Q |
| |
|
||||||| ||| | |||| || ||||||||||||||||| |||| || ||||||| |||||||| | |||| ||||| ||||||| |||| || || |
|
|
| T |
17183263 |
ttctaactcgcattgtcaatctctcgcgttttatggatgtaatttataagcatgaagacaactacacgcattctaaaggagaaatgaagacatacattaa |
17183362 |
T |
|
| Q |
209 |
agctgttcttgttgatccagttccaatttgatcattaat |
247 |
Q |
| |
|
|||| | ||||| ||||| || ||||||||| ||||||| |
|
|
| T |
17183363 |
agctttgcttgtagatccggtgccaatttgagcattaat |
17183401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 25794373 - 25794490
Alignment:
| Q |
133 |
cgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaagctgttcttgttgatccagttcc |
232 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||||||| ||| | |||||||| ||||||| ||| || |||||| | ||||| |||||||| |
|
|
| T |
25794373 |
cgcgttttatggacgtagtttataaagataaagataacttcactcacactgaaggagaaatgaagacattcattaaagctttgcttgtagatccagtgtt |
25794472 |
T |
|
| Q |
233 |
aatttgatcattaatttt |
250 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25794473 |
aatttgatcattaatttt |
25794490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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