View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_52 (Length: 358)
Name: NF13777_low_52
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_52 |
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| [»] scaffold0490 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 2818061 - 2817709
Alignment:
| Q |
1 |
agatgcatatgatgaaaaactaattgtctatatataggaaataaaaatcttacattaattaacaaatgagttatgatccattttttgattggtagagtat |
100 |
Q |
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| T |
2818061 |
agatgaatatgatgaaaaactaattgtctatatataggaaataaaaatcttacattaattaacaaatgagttatgatc-attttttgattggtagagtat |
2817963 |
T |
|
| Q |
101 |
atgacgatctttataaatcatttccaagatcctaatatttattggtttgaccaacttgtaaaaactatta-tgttctgacaagtta----gtaacggttc |
195 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |
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| T |
2817962 |
atgatgatctttataaatcatttccaagatcccaatatttattggtttgaccaacttgtaaaaactattaatgttctgataagttatttagtaacggttc |
2817863 |
T |
|
| Q |
196 |
cctttatttatgcaacgagtttgattgcatctcctttcacttcggtatagtcggataacaacctccatagtactgact--------tctgaggtctgaaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2817862 |
cctttatttatgcaacgagtttgattgcatctcctttcacttcggtatagtcggataacaacctccatagtactgactttccctactctgaggtctgaaa |
2817763 |
T |
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| Q |
288 |
agatagaaggaatatctaacctaannnnnnnatccattaccatcaacacagaatc |
342 |
Q |
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| T |
2817762 |
agatagaaggaatatctaacctaa-tttttgatccattaccatcaacacagaatc |
2817709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 30889987 - 30890067
Alignment:
| Q |
1 |
agatgcatatgatgaaaaactaattgtctatatataggaaataaaaatcttacattaattaacaaatgagttatgatccatttt |
84 |
Q |
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| T |
30889987 |
agatgaatatgatgaaaaactaattatctatttatag---agaaaaatctcacattaattaagaaatgagtcatgatcaatttt |
30890067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 13923225 - 13923301
Alignment:
| Q |
9 |
atgatgaaaaactaattgtctatatataggaaataaaaat-cttacattaattaacaaatgagttatgatccatttt |
84 |
Q |
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|||||||||||| |||||||||||||||||||| ||||| | | ||||||| |||||||||| |||||||||||| |
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| T |
13923225 |
atgatgaaaaacaaattgtctatatataggaaaaaaaaaaacatgtattaatttacaaatgagtcatgatccatttt |
13923301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 10780712 - 10780653
Alignment:
| Q |
24 |
ttgtctatatataggaaataaaaatcttacattaattaacaaatgagttatgatccatttt |
84 |
Q |
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| T |
10780712 |
ttgtctatatatagaaaa-aaaaatcatataataattaacaaatgagtaatgatccatttt |
10780653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 10974321 - 10974262
Alignment:
| Q |
24 |
ttgtctatatataggaaataaaaatcttacattaattaacaaatgagttatgatccatttt |
84 |
Q |
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|||||||||||||| ||| ||||||| || | |||||||||||||||| |||||||||||| |
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| T |
10974321 |
ttgtctatatatagaaaa-aaaaatcatataataattaacaaatgagtaatgatccatttt |
10974262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 4930333 - 4930259
Alignment:
| Q |
9 |
atgatgaaaaactaattgtctatatataggaaataaaaatcttacattaattaacaaatgagttatgatccatttt |
84 |
Q |
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| T |
4930333 |
atgatgaaaaacaaattgtctatatatagggaa-aaaaaacatgtattaatttacaaatgagtcatgatccatttt |
4930259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 30162100 - 30162048
Alignment:
| Q |
7 |
atatgatgaaaaactaattgtctatatataggaaataaaaatcttacattaatta |
61 |
Q |
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| T |
30162100 |
atatgatgaaaaactaattgtctatatatagcga--aaaaatcttacattaatta |
30162048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20793837 - 20793895
Alignment:
| Q |
1 |
agatgcatatgatgaaaaactaattgtctatatataggaaataaaaatcttacattaatta |
61 |
Q |
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| T |
20793837 |
agatgaatatgatgaaaaactaattgtttatatatagcga--aaaaatcttacattaatta |
20793895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0490 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0490
Description:
Target: scaffold0490; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 11176 - 11118
Alignment:
| Q |
1 |
agatgcatatgatgaaaaactaattgtctatatataggaaataaaaatcttacattaatta |
61 |
Q |
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| T |
11176 |
agatgaatatgatgaaaaactaattgtctatatatggcga--aaaaatcttacattaatta |
11118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19096989 - 19096955
Alignment:
| Q |
1 |
agatgcatatgatgaaaaactaattgtctatatat |
35 |
Q |
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| T |
19096989 |
agatgaatatgatgaaaaactaattgtctatatat |
19096955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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