View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_55 (Length: 353)
Name: NF13777_low_55
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 27208050 - 27208387
Alignment:
| Q |
1 |
atcagaatacataacttttacctgagaaaccaaaccagaggcattgaattcagacaaaagctttttccagaaatgtaaagagggaacaataccaagggca |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| |||| |
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| T |
27208050 |
atcagaatacataacctttacctgagaaaccaaaccagaggcattgaattcagacaaaaggtttttccagaaatgtaaagagggaacaaaatcaaaggca |
27208149 |
T |
|
| Q |
101 |
cgcatgcgagagaaagtataagaggcggtggagtatctgctacatttcaagtagagactaataagggtgtagaagaatgaaacatagagatgggttttgg |
200 |
Q |
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||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
27208150 |
cgcatgcgagagaaagtatcagaggcggtggagaatctgccacatttcaagtagagactaatgagagtgtagaagaatgaaacatagagatgggttttgg |
27208249 |
T |
|
| Q |
201 |
tgggtgggatcaaaatcggatctttatggagttgggaggagaattttgtgatgggtgtagggtggaaggttcttgtgactctggtggatgagagaaggga |
300 |
Q |
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| T |
27208250 |
tgggtgggatcaaaatcggatctttatggagttgggaggagaattttgtgatgggtgtagagtggaaggttcttgtgactctggtggatgagagaaggga |
27208349 |
T |
|
| Q |
301 |
tacaaggttgttggtttgaacattcttcagatgatgtt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27208350 |
tacaaggttgttggtttgaacattcttcagatgatgtt |
27208387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 35612494 - 35612759
Alignment:
| Q |
1 |
atcagaatacataacttttacctgagaaaccaaaccagaggcattgaattcagacaaaagctttttccagaaatgtaaagagggaacaataccaagggca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||| |||||| ||||||| |||||| ||| |
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| T |
35612494 |
atcagaatacataagttttacctgagaaaccaaaccagaggcattgaattgatacaaaagggtattccagaaaggtaaagtaggaacaagaccaagagca |
35612593 |
T |
|
| Q |
101 |
cgcatgcgagagaaagtataagaggcggtggagtatctgctacatttcaagtagagactaataagggtgtagaagaatgaaacatagagatgggttttgg |
200 |
Q |
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|||||| |||||||||| ||||||||||||| ||||| | | |||||||||| | ||| |||||| |||||||||||||||||||||||||||||| |
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| T |
35612594 |
cgcatgtgagagaaagtggcagaggcggtggagaatctgtcatgtgtcaagtagaggcgaatgagggtgcagaagaatgaaacatagagatgggttttgg |
35612693 |
T |
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| Q |
201 |
tgggtgggatcaaaatcggatctttatggagttgggaggagaa---ttttgtgatgggtgtagggt |
263 |
Q |
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|||||||||| ||||| | ||||||||||| |||||||||||| | |||||||||||||||||| |
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| T |
35612694 |
tgggtgggataaaaattgaatctttatggatttgggaggagaatgttcttgtgatgggtgtagggt |
35612759 |
T |
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