View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_58 (Length: 348)
Name: NF13777_low_58
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_58 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 38443124 - 38442780
Alignment:
| Q |
1 |
cgagaaaagacgggtgaaactgttgggaccttctgnnnnnnnaactatgtgaattgtgagatattcaaatttatatgtattttcattaactgaatttcca |
100 |
Q |
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| T |
38443124 |
cgagaaaagacggatgaaactgttgggaccttctctttttttaactatgtgaattgtgagatattcaaatttatatgtattt-cattaactgaatttcca |
38443026 |
T |
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| Q |
101 |
aaatattaggggggaatgaaagagagttttaaataaataaactatggcaaatatagtttgactaaccgaattttccaaatactatgggaatgtgaaaatt |
200 |
Q |
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| T |
38443025 |
aaatattaggggggaatgaaagagagttttaaataaataaactatggc-aatatagttggacttaccgaattttccaaatactatgggaatgtgaaaatt |
38442927 |
T |
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| Q |
201 |
cttatccatgttgtttgttaacttttcacgtgaannnnnnnngataagccatgtaacttatcccatgccatttatataaggcatataacttatcacaatt |
300 |
Q |
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| T |
38442926 |
cttat-catgttgtttgttaacttttcacgtgaattttttttgataagccatttaacttatcccatcccatttatataaggcatataacttatcacaatt |
38442828 |
T |
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| Q |
301 |
atattgtcaagtatattgcacaaacctacctgcaaaccccttgctact |
348 |
Q |
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| T |
38442827 |
atattgtcaagtatattgcacaaacctacctgcaaaccctttgatact |
38442780 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 53352659 - 53352723
Alignment:
| Q |
274 |
atataaggcatataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaacc |
338 |
Q |
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| T |
53352659 |
atataaggcatataacttatcccaattatattaccatgtatatcgcacaaacctaccttcaaacc |
53352723 |
T |
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