View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_59 (Length: 347)
Name: NF13777_low_59
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 49150144 - 49149814
Alignment:
| Q |
13 |
aaaaccacatttgaagttattgcctttttactcgaaggatcattaaaataacaattgaaggatattgtgagcaaataatagacatttatagaatataaca |
112 |
Q |
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| T |
49150144 |
aaaaccacatttgaagttattgcctttttactcgaaggatcattaaaataacaattgaag-atattgtgagcaaataatagacctttatagaatataaca |
49150046 |
T |
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| Q |
113 |
tcaatgaaataagaattcgatgtatctatattagtccaannnnnnnnggcctcttctaataaaagcaagattaccagaaatgtcgtagattgctacacca |
212 |
Q |
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| T |
49150045 |
tcaatgaaataagaattcgatgtatctatattagtccaattttttt-ggcctcttctaataaaagcaagattaccagaaatgtcgtagattgctacacca |
49149947 |
T |
|
| Q |
213 |
cataatcatttggacttgttattagatcagcagataaagtaaccttataaacccaattgatgggtggcagaataatgggaggtatatccttaaaaggatt |
312 |
Q |
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| T |
49149946 |
cataatcatttggacttgttattagatcagcagataaagtaaccttataaacccaattgatgggtggcagaataatgggaggtatatccttaaaaggatt |
49149847 |
T |
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| Q |
313 |
cattagtgttaaggtagacttagaattatctac |
345 |
Q |
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| T |
49149846 |
cattagtgttaaggtagacttagaataatctac |
49149814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 323
Target Start/End: Complemental strand, 49145572 - 49145321
Alignment:
| Q |
72 |
ggatattgtgagcaaataatagacatttatagaatataacatcaatgaaataagaattcgatgtatctatattagtccaannnnnnnnggcctcttctaa |
171 |
Q |
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| T |
49145572 |
ggatattgagagcaaataatagacctttataaaatatgacatcaatgaaagaagattttgatgtgtctatataagtccaattttgtt-gacctcgtccaa |
49145474 |
T |
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| Q |
172 |
taaaagcaagattaccagaaatgtcgtagattgctaca-ccacataatcatttggacttgttattagatcagcagataaagtaaccttataaacccaatt |
270 |
Q |
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| T |
49145473 |
cataagcaagattaccacaatcatcataaattgctacaaccatataatcatttggactttgcattggatcagcagataaagtaaccttgttaacagaatt |
49145374 |
T |
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| Q |
271 |
gatgggtggcagaataatgggaggtatatccttaaaaggattcattagtgtta |
323 |
Q |
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| T |
49145373 |
gaggggtgggagagtaatgcaaggtgtatccttaaaaggactcattagggtta |
49145321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 76 - 345
Target Start/End: Complemental strand, 4235998 - 4235733
Alignment:
| Q |
76 |
attgtgagcaaataatagacatttatagaatataacatcaatgaaataagaattcgatgtatctatattagtccaannnnnnnnggcctcttctaataaa |
175 |
Q |
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|||| ||||||||||||||| |||||| ||||| |||||||| ||| |||| || ||||| ||||||| ||||||| | ||||||| ||| | |
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| T |
4235998 |
attgagagcaaataatagacctttataaaatatgacatcaataaaagaagattt-gatgtgtctatataagtccaattttgtt-gacctcttccaatgta |
4235901 |
T |
|
| Q |
176 |
agcaagattaccagaaatgtcgtagattgctaca-ccacataatcatttggacttgttattagatcagcagataaagtaaccttataaacccaattgatg |
274 |
Q |
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| T |
4235900 |
agcaagattaccaga---gtcataaattgctacaaccatataattatttggactttttattggattagtggataaagtaaccttgtaaacagaattgagg |
4235804 |
T |
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| Q |
275 |
ggtggcagaataatgggaggtatatccttaaaaggattcattagtgttaaggtagacttagaattatctac |
345 |
Q |
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||||| ||||||| | ||||||||||||||||||| ||||||| |||| | |||||||||| |||||| |
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| T |
4235803 |
ggtgggagaataacgcaaggtatatccttaaaaggactcattagggttataatggacttagaatcatctac |
4235733 |
T |
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