View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_6 (Length: 588)

Name: NF13777_low_6
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_6
NF13777_low_6
[»] chr7 (3 HSPs)
chr7 (1-577)||(32413543-32414123)
chr7 (447-519)||(45498200-45498272)
chr7 (446-508)||(6889134-6889196)
[»] chr6 (9 HSPs)
chr6 (411-519)||(7115535-7115647)
chr6 (411-519)||(7120607-7120719)
chr6 (411-519)||(7124011-7124123)
chr6 (414-508)||(8656643-8656741)
chr6 (418-508)||(7175430-7175524)
chr6 (434-519)||(7140752-7140837)
chr6 (434-519)||(8680366-8680451)
chr6 (19-105)||(7174998-7175084)
chr6 (438-479)||(33844310-33844351)
[»] chr8 (1 HSPs)
chr8 (321-495)||(27701805-27701983)
[»] chr3 (9 HSPs)
chr3 (434-531)||(7104294-7104391)
chr3 (420-538)||(4149545-4149667)
chr3 (420-538)||(4165317-4165439)
chr3 (444-531)||(2996512-2996599)
chr3 (441-508)||(7177938-7178005)
chr3 (434-519)||(476016-476101)
chr3 (434-472)||(25601731-25601769)
chr3 (405-519)||(7125904-7126021)
chr3 (434-531)||(7177801-7177898)
[»] chr1 (1 HSPs)
chr1 (447-519)||(14288925-14288997)
[»] chr4 (3 HSPs)
chr4 (434-541)||(3978055-3978162)
chr4 (439-471)||(29676507-29676539)
chr4 (434-510)||(52186813-52186889)
[»] chr5 (3 HSPs)
chr5 (434-510)||(25064237-25064313)
chr5 (473-538)||(38142201-38142266)
chr5 (467-519)||(7022045-7022097)
[»] chr2 (1 HSPs)
chr2 (434-495)||(43864075-43864136)
[»] scaffold0896 (1 HSPs)
scaffold0896 (414-479)||(1474-1543)


Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 32414123 - 32413543
Alignment:
Q  1 aaggctgaaaaaggttcaacacggccatcattgccgacgcaaaagacgaaggaatttaaagacaagttgagtaatgctggaagattcagagaattaggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32414123 aaggctgaaaaaggttcaacacggccatcattgccgacgcaaaagacgaaggaatataaagacaagttgagtaatgctggaagattcagagaattaggaa 32414024  T
Q  101 ataattttccaccataagacattctacggccatcggaaaggtcgagactaagagacgttaaagtccgacaagaaaagaaactaggtggaaagtattccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32414023 ataattttccaccataagacattctacggccatcggaaaggtcgagactaagagacgttaaagtccgacaagaaaagaaactaggtggaaagtattccat 32413924  T
Q  201 attaccagcaacagatatatctaattgctggacgttgtgcgaaacagcatattttacaannnnnnnnagtaggtaaggctctacgattgcagtgcggcaa 300  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  32413923 attaccagcaacagatacatctaattgctggacgttgtgcgaaacagcatattttacaatttttttgagtaggtaaggctctacgattgcagtgcggcaa 32413824  T
Q  301 aaatccacagtatgcaatgaggttgagtcatttcgaagagacaaaactcgagacacgaatttcgcgaatctcttgacatttctaaagtctgaagacctta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32413823 aaatccacagtatgcaatgaggttgagtcatttcgaagagacaaaactcgagacacgaatttcgcgaatctcttgacatttctaaagtctgaagacctta 32413724  T
Q  401 acgcaagggatggaagacgcttccagagattct----tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaag 496  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32413723 acgcaagggatggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaag 32413624  T
Q  497 taaaacacaatcagataaatcaccgagtctgtcttgattttcgctattattgctgttatgttcaagctttcgtttcttcat 577  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32413623 taaaacacaatcagataaatcactgagtctgtcttgattttcactattattgctgttatgttcaagctttcgtttcttcat 32413543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 519
Target Start/End: Original strand, 45498200 - 45498272
Alignment:
Q  447 atgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 519  Q
    ||||||||||||||||||  |||||| |||||| | || |  |||||||||||||| ||||||| ||||||||    
T  45498200 atgcaagtttgaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac 45498272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 508
Target Start/End: Complemental strand, 6889196 - 6889134
Alignment:
Q  446 aatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 508  Q
    ||||||||||||||| |||| | |||||| |||| | |||||||||||||| | |||||||||    
T  6889196 aatgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatgtgaagaataacacaatc 6889134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 411 - 519
Target Start/End: Original strand, 7115535 - 7115647
Alignment:
Q  411 tggaagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaa 506  Q
    |||||||| ||||||||||||||||    || |||||||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  7115535 tggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaa 7115634  T
Q  507 tcagataaatcac 519  Q
    |||| ||||||||    
T  7115635 tcaggtaaatcac 7115647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 411 - 519
Target Start/End: Original strand, 7120607 - 7120719
Alignment:
Q  411 tggaagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaa 506  Q
    |||||||| ||||||||||||||||    || |||||||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  7120607 tggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaa 7120706  T
Q  507 tcagataaatcac 519  Q
    |||| ||||||||    
T  7120707 tcaggtaaatcac 7120719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 411 - 519
Target Start/End: Original strand, 7124011 - 7124123
Alignment:
Q  411 tggaagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaa 506  Q
    |||||||| ||||||||||||||||    || |||||||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  7124011 tggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaa 7124110  T
Q  507 tcagataaatcac 519  Q
    |||| ||||||||    
T  7124111 tcaggtaaatcac 7124123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 414 - 508
Target Start/End: Original strand, 8656643 - 8656741
Alignment:
Q  414 aagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 508  Q
    ||||||||||||||||||||||    || ||| |||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||||    
T  8656643 aagacgcttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatc 8656741  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 418 - 508
Target Start/End: Original strand, 7175430 - 7175524
Alignment:
Q  418 cgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 508  Q
    ||||||||||||||||||    | ||||| ||||||||||||||||| ||||| ||||| || ||  ||||||||||||||||||||||||||||    
T  7175430 cgcttccagagattcttccatctagtggataaaatgcaagtttgaactgcgtgcttggtttttaacaaggagagtatgtgaagtaaaacacaatc 7175524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 519
Target Start/End: Original strand, 7140752 - 7140837
Alignment:
Q  434 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 519  Q
    |||| |||||||||| ||||||||||| |||| ||| || |||||| | ||||||||||||||||||||||| || | ||||||||    
T  7140752 tcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcac 7140837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 519
Target Start/End: Original strand, 8680366 - 8680451
Alignment:
Q  434 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 519  Q
    |||| |||||||||| ||||||||||| |||| ||| || |||||| | ||||||||||||||||||||||| || | ||||||||    
T  8680366 tcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcac 8680451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 7174998 - 7175084
Alignment:
Q  19 acacggccatcattgccgacgcaaaagacgaaggaatttaaagacaagttgagtaatgctggaagattcagagaattaggaaataat 105  Q
    ||||||||||||| |||  | | |||| | ||| ||| |||||||||||||  ||| ||||||| |||||||||||| |||||||||    
T  7174998 acacggccatcatcgcccgcacgaaaggctaagtaatgtaaagacaagttggttaaagctggaaaattcagagaatttggaaataat 7175084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 479
Target Start/End: Original strand, 33844310 - 33844351
Alignment:
Q  438 gtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaa 479  Q
    |||||||||||||||||||||||||||| || ||| ||||||    
T  33844310 gtggacaaaatgcaagtttgaacggcgttttcggttttcaaa 33844351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 495
Target Start/End: Original strand, 27701805 - 27701983
Alignment:
Q  321 ggttgagtcatttcgaagagacaaaactcgagacacgaatttcgcgaatctcttgacatttctaaagtctgaagaccttaacgcaagggatggaagacgc 420  Q
    |||||||||||  |||||||||||||| |||||||||||||| |  || ||||||| | || |||||| ||| ||  ||||   ||||| |||||||||     
T  27701805 ggttgagtcatcgcgaagagacaaaacccgagacacgaatttggtaaaactcttgagagttttaaagtgtgaggagtttaatctaagggttggaagacgt 27701904  T
Q  421 ttccagagatt----cttcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaa 495  Q
    |||||||||||    | ||||||||| | ||||  |||||||||||| |||||||| |  |||||||||||||||||||    
T  27701905 ttccagagattgttccatcttgtggaaagaatggtagtttgaacggcatgtttggtttctaaagaggagagtatgtgaa 27701983  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 531
Target Start/End: Original strand, 7104294 - 7104391
Alignment:
Q  434 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtctt 531  Q
    |||||| ||||||| ||| ||||||||||| |||||||| | |||||||||||||||| |||| | |||||| || |  ||||||| |||||||||||    
T  7104294 tcttgtagacaaaacgcatgtttgaacggcttgtttggtatgcaaagaggagagtatgcgaagaagaacacagtccggcaaatcactgagtctgtctt 7104391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 538
Target Start/End: Complemental strand, 4149667 - 4149545
Alignment:
Q  420 cttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaa 515  Q
    ||||||||||||||||    | |||||||||| ||| ||||||||||| | |||||||||||||   || |||||| ||||||| |||||||  | ||||    
T  4149667 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaatcgacagtatgagaagtaacacacaattcggtaaa 4149568  T
Q  516 tcaccgagtctgtcttgattttc 538  Q
    |||| || |||||||| ||||||    
T  4149567 tcactgattctgtcttcattttc 4149545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 538
Target Start/End: Complemental strand, 4165439 - 4165317
Alignment:
Q  420 cttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaa 515  Q
    ||||||||||||||||    | |||||||||| ||| ||||||||||| | |||||||||||||   || |||||| ||||||| |||||||  | ||||    
T  4165439 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaatcgacagtatgagaagtaacacacaattcggtaaa 4165340  T
Q  516 tcaccgagtctgtcttgattttc 538  Q
    |||| || |||||||| ||||||    
T  4165339 tcactgattctgtcttcattttc 4165317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 531
Target Start/End: Original strand, 2996512 - 2996599
Alignment:
Q  444 aaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtctt 531  Q
    ||||||||||||||||| || | ||| ||||||||| | || ||||||||||| | ||||||||||| ||| |||| ||| |||||||    
T  2996512 aaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtgaaggataacacaatcagttaagtcactgagcctgtctt 2996599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 508
Target Start/End: Complemental strand, 7178005 - 7177938
Alignment:
Q  441 gacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 508  Q
    |||||||  ||||||||||  |||| ||||||||||||| ||||| |||||||||||| |||||||||    
T  7178005 gacaaaacacaagtttgaaaagcgtatttggtgttcaaaaaggagtgtatgtgaagtagaacacaatc 7177938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 434 - 519
Target Start/End: Complemental strand, 476101 - 476016
Alignment:
Q  434 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 519  Q
    |||| |||| ||||| |||||||||||||| | ||||| ||| ||| |||||||| ||||||| | || |||||| ||||||||||    
T  476101 tcttttggataaaatacaagtttgaacggcttctttggcgtttaaaaaggagagtgtgtgaaggagaatacaatctgataaatcac 476016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 472
Target Start/End: Complemental strand, 25601769 - 25601731
Alignment:
Q  434 tcttgtggacaaaatgcaagtttgaacggcgtgtttggt 472  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  25601769 tcttgtggacaaaatgcaagtttgaacagcatgtttggt 25601731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 519
Target Start/End: Complemental strand, 7126021 - 7125904
Alignment:
Q  405 aagggatggaagacgcttccagagattct----tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaa 500  Q
    ||||| ||||||||| |||||||||||||    |||| ||||||| || |||||||||| |||  |||| || | |||||| |||||||| ||||| | |    
T  7126021 aagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaaga-gagagtatttgaagaaga 7125923  T
Q  501 acacaatcagataaatcac 519  Q
    |||||||| | ||||||||    
T  7125922 acacaatcgggtaaatcac 7125904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 531
Target Start/End: Complemental strand, 7177898 - 7177801
Alignment:
Q  434 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtctt 531  Q
    |||| ||||||  |||||||||||||   | ||||||||||||||| ||||||||||||  || | || |||||||| |||||| | |||||| ||||    
T  7177898 tcttatggacagtatgcaagtttgaataacctgtttggtgttcaaaaaggagagtatgtacagaagaatacaatcaggtaaatcgctgagtctatctt 7177801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 519
Target Start/End: Original strand, 14288925 - 14288997
Alignment:
Q  447 atgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 519  Q
    ||||||||||||||||||| |||||| |||||| | || |  |||||||||||||| ||||||| ||||||||    
T  14288925 atgcaagtttgaacggcgtatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac 14288997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 541
Target Start/End: Complemental strand, 3978162 - 3978055
Alignment:
Q  434 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtcttga 533  Q
    ||||||||| |||| |||||||||||| ||||| |||||||| ||| | |||||||||||||| | ||  |  |||| ||| || | ||||||||||| |    
T  3978162 tcttgtggataaaacgcaagtttgaaccgcgtggttggtgtttaaaaacgagagtatgtgaagaataatgctttcaggtaagtcgctgagtctgtcttca 3978063  T
Q  534 ttttcgct 541  Q
    ||||||||    
T  3978062 ttttcgct 3978055  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 29676539 - 29676507
Alignment:
Q  439 tggacaaaatgcaagtttgaacggcgtgtttgg 471  Q
    ||||||||||||||||||||||| |||||||||    
T  29676539 tggacaaaatgcaagtttgaacgacgtgtttgg 29676507  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 510
Target Start/End: Complemental strand, 52186889 - 52186813
Alignment:
Q  434 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcag 510  Q
    |||| ||||||||||||| ||||||||||| ||||| | ||||| | ||||||||| ||| || | |||| ||||||    
T  52186889 tcttttggacaaaatgcaggtttgaacggcctgttttgcgttcagaaaggagagtaggtggaggagaacagaatcag 52186813  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 510
Target Start/End: Complemental strand, 25064313 - 25064237
Alignment:
Q  434 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcag 510  Q
    ||||| |||||| ||||| ||||| || || ||||||||||  | | |||||||||||||||||| |||||||||||    
T  25064313 tcttggggacaatatgcatgtttggactgcatgtttggtgtctagaaaggagagtatgtgaagtagaacacaatcag 25064237  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 538
Target Start/End: Original strand, 38142201 - 38142266
Alignment:
Q  473 gttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtcttgattttc 538  Q
    ||||||| |||||||||||||||| | |||||| |||| ||| || | ||||||||||| ||||||    
T  38142201 gttcaaaaaggagagtatgtgaaggataacacagtcaggtaagtcgctgagtctgtcttcattttc 38142266  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 519
Target Start/End: Complemental strand, 7022097 - 7022045
Alignment:
Q  467 tttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 519  Q
    |||||||| |||| |||||||||||||||||| || ||||| || ||||||||    
T  7022097 tttggtgtccaaaaaggagagtatgtgaagtacaagacaattaggtaaatcac 7022045  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 495
Target Start/End: Original strand, 43864075 - 43864136
Alignment:
Q  434 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaa 495  Q
    |||| ||||||||||||||||||||||||| | ||| |  |||||| |||| ||||||||||    
T  43864075 tcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaa 43864136  T

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Target: scaffold0896 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 479
Target Start/End: Complemental strand, 1543 - 1474
Alignment:
Q  414 aagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaa 479  Q
    ||||||||||||||||||||||    || ||| |||||  ||||||||||| |||| |||||||||||||    
T  1543 aagacgcttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaa 1474  T

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