View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_low_62 (Length: 331)
Name: NF13777_low_62
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_62 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 26426228 - 26425934
Alignment:
| Q |
17 |
aatatcactgaagctaactcgatgattcaaattaatcatgcaattataatttgaactaatcaattttcatattgtggctctattttaatttttaactatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26426228 |
aatatcactgaagctaactcgatgattcaaattaatcatgcaattataatttgaactaatcaattttcatattgtggctctattttaatttt-aactatg |
26426130 |
T |
|
| Q |
117 |
tttaaattatgtgaatatattatttcagtgattgaatgattgcataggatcaagaatagtcattttgtattatattcagataaggtcgccactgtctttg |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26426129 |
tttaaatcatgtgaatatattatttcagtgattgaatgattgcataggatcaagaatagtcattttgtattatattcagataaggtcgccactgtctttg |
26426030 |
T |
|
| Q |
217 |
gtaataataatctgtcaactcaacaggctctacagaatagtaggaataccggttagtttaatttattggaattgaaaattaactagtgattgctaactg |
315 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26426029 |
gtaa---taatctgtcaactcaacaggctctacggaatagtaggaataccggttagtttaatttattggaattgaaaattaactagtgattgctaactg |
26425934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 26425935 - 26425829
Alignment:
| Q |
157 |
tgcataggatcaagaatagtcattttgtattatattcagataaggtcgccactgtctttggtaataataatctgtc-aactcaacaggctctacagaata |
255 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
26425935 |
tgcattggatcaagaatagtcattttgtattatattcacataaggtcgctactgtctgcgg---taatgatctgtctgactcaacaggctctagggaata |
26425839 |
T |
|
| Q |
256 |
gtaggaatac |
265 |
Q |
| |
|
||||| |||| |
|
|
| T |
26425838 |
gtagggatac |
26425829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University