View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_64 (Length: 323)
Name: NF13777_low_64
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_64 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 16833198 - 16832892
Alignment:
| Q |
1 |
tggccatgaccctttggcaaacatttaacttgatttggtgttgtattatgattaagttcatccatgtagccaaccccacttaatataataaagcttagtt |
100 |
Q |
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| T |
16833198 |
tggccatgaccctttggcaaatatttaacttgatttggtgttatattatgattaagttcatccatgtagccaaccccacttaatataataaagcttagtt |
16833099 |
T |
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| Q |
101 |
gttaatcttgttgtggtattgaattattattatttatataagcacttcaaaattttcaattggactattggtttcattctatttggaagccacttgtata |
200 |
Q |
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| T |
16833098 |
gttaatcttgttgtggtattgaattattattatttatataagcacttcaaaattttcaattggactattggtttcattctatttggaagccacttgtata |
16832999 |
T |
|
| Q |
201 |
tcattatcaaattaatattctgtcagtgtaaatttttattacaaggtcaatcaatcattaatccctgctaaaggatcattcttgtgtcgttgagaagaaa |
300 |
Q |
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| T |
16832998 |
tcattatcaaattaatattctgtcagtgtaaatttttattacaaggtcaatcaatcattaatccctgctaaaggatcattcttgtgtcgttgagaagaaa |
16832899 |
T |
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| Q |
301 |
gttgatg |
307 |
Q |
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| T |
16832898 |
gttgatg |
16832892 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 33271954 - 33271915
Alignment:
| Q |
64 |
atgtagccaaccccacttaatataataaagcttagttgtt |
103 |
Q |
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| T |
33271954 |
atgtagccaaccccacttaataagataaagcttagttgtt |
33271915 |
T |
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