View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_65 (Length: 319)

Name: NF13777_low_65
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_65
NF13777_low_65
[»] chr3 (1 HSPs)
chr3 (1-318)||(41656887-41657204)
[»] chr5 (1 HSPs)
chr5 (241-303)||(12574011-12574073)
[»] chr7 (1 HSPs)
chr7 (241-303)||(39681908-39681970)
[»] chr2 (2 HSPs)
chr2 (241-303)||(39942275-39942337)
chr2 (269-301)||(38217007-38217039)
[»] chr4 (2 HSPs)
chr4 (256-302)||(28805200-28805246)
chr4 (241-303)||(27794253-27794315)
[»] chr1 (2 HSPs)
chr1 (160-209)||(48727955-48728004)
chr1 (256-303)||(35425818-35425865)
[»] chr8 (1 HSPs)
chr8 (154-209)||(40641145-40641200)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 41656887 - 41657204
Alignment:
Q  1 tcatactattggcgtgtgcataagtttcttattcactttatccttcatttcactgtttctttttcaatttaaaatttaattgcttccatgtaaaccatgt 100  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41656887 tcatactattggtgtgtgcataaatttcttattcactttatccttcatttcactgtttctttttcattttaaaatttaattgcttccatgtaaaccatgt 41656986  T
Q  101 caaatttcgaagggaaaagaagaggaattaggctaactttactttgcgaaaacattttcattttcttaaacttttgttaattttacttgctaacaaacag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41656987 caaatttcgaagggaaaagaagaggaattaggctaactttactttgcgaaaacattttcattttcttaaacttttgttaattttacttgctaacaaacag 41657086  T
Q  201 ataatagaccaattttcaaaaacagtgaaaatgccgaaaaattattttcataaacgcatcatcgctagctagcatttcatattctctccatcacaatggt 300  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41657087 ataatagaccaattttcaaaaacaatgaaaatgccgaaaaattattttcataaatgcatcatcgctagctagcatttcatattctctccatcacaatggt 41657186  T
Q  301 tcagatcttcttatcagt 318  Q
    ||||||||||||||||||    
T  41657187 tcagatcttcttatcagt 41657204  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 12574011 - 12574073
Alignment:
Q  241 attattttcataaacgcatcatcgctagctagcatttcatattctctccatcacaatggttca 303  Q
    ||||||| |||||| ||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  12574011 attatttccataaatgcatcatccatagctagcatttcatcttctctccatcacaatggttca 12574073  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 39681908 - 39681970
Alignment:
Q  241 attattttcataaacgcatcatcgctagctagcatttcatattctctccatcacaatggttca 303  Q
    |||||||||| ||| ||||||||  || |||||||||||| ||||||||||||||||||||||    
T  39681908 attattttcaaaaatgcatcatctataactagcatttcatcttctctccatcacaatggttca 39681970  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 39942337 - 39942275
Alignment:
Q  241 attattttcataaacgcatcatcgctagctagcatttcatattctctccatcacaatggttca 303  Q
    ||||||| || ||| |||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  39942337 attatttccagaaatgcatcatccctagctagcatttcacattctttccatcacaatggttca 39942275  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 38217039 - 38217007
Alignment:
Q  269 ctagcatttcatattctctccatcacaatggtt 301  Q
    |||||||||||| ||||||||||||||||||||    
T  38217039 ctagcatttcatcttctctccatcacaatggtt 38217007  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 28805246 - 28805200
Alignment:
Q  256 gcatcatcgctagctagcatttcatattctctccatcacaatggttc 302  Q
    |||||||| |||||||||||||||| || ||||||||||||||||||    
T  28805246 gcatcatccctagctagcatttcatcttatctccatcacaatggttc 28805200  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 27794253 - 27794315
Alignment:
Q  241 attattttcataaacgcatcatcgctagctagcatttcatattctctccatcacaatggttca 303  Q
    ||||||| || ||| |||||||| ||||||| | |||||| |||||||||||||| |||||||    
T  27794253 attatttccagaaatgcatcatctctagctatcttttcatcttctctccatcacattggttca 27794315  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 48727955 - 48728004
Alignment:
Q  160 attttcttaaacttttgttaattttacttgctaacaaacagataatagac 209  Q
    ||||||| ||| || ||||||||||||||||||||||| |||||||||||    
T  48727955 attttctaaaatttgtgttaattttacttgctaacaaatagataatagac 48728004  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 35425818 - 35425865
Alignment:
Q  256 gcatcatcgctagctagcatttcatattctctccatcacaatggttca 303  Q
    |||||||  ||||||||| |||||| ||||||||||||||||||||||    
T  35425818 gcatcattcctagctagcgtttcattttctctccatcacaatggttca 35425865  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 40641200 - 40641145
Alignment:
Q  154 attttcattttcttaaacttttgttaattttacttgctaacaaacagataatagac 209  Q
    ||||||||||||| ||| || ||||||||||||||||||||| | ||||| |||||    
T  40641200 attttcattttctaaaatttgtgttaattttacttgctaacagagagatactagac 40641145  T

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