View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_66 (Length: 313)
Name: NF13777_low_66
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 36169870 - 36170188
Alignment:
| Q |
3 |
atgaaaaagcagataaagtggtcacatcacataaattggggcgggtatctcttttgaaaacatacaatacca----------------tatcat------ |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36169870 |
atgaaaaagcagataaagtggtcacatcacataaattggggcgggtatctcttttgaaaacatacaataccataccatattaatatcatatcatttttat |
36169969 |
T |
|
| Q |
81 |
agtatagcagcaaaagaaaattagtactaacaaacaaacccacgttcctatttaacaacctaaccgtctcagtcctactag--ctactacaactcttcac |
178 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36169970 |
agtatagcagcaaaagaaaactagtactaacaaacaaacccacgttcctatttaacaacctaaccgtctcagtcctactagagctactacaactcttcac |
36170069 |
T |
|
| Q |
179 |
ttttggtctctattttattctcttaagtcaagaaatcaaacaatgaagtggagtggaagaaaaccttcttcaggttcttcttcaaaaccttccttcatct |
278 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36170070 |
ttttggtctctattttgttctcttaagtcaagaaatcaaacaatgaagtggagtggaagaaaaccttcttcagcttcttcttcaaaaccttccttcatct |
36170169 |
T |
|
| Q |
279 |
ctcatgtatcctctttttc |
297 |
Q |
| |
|
||||||||||||||||||| |
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| T |
36170170 |
ctcatgtatcctctttttc |
36170188 |
T |
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