View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_7 (Length: 577)

Name: NF13777_low_7
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_7
NF13777_low_7
[»] chr2 (17 HSPs)
chr2 (1-409)||(13736247-13736655)
chr2 (382-561)||(13735951-13736130)
chr2 (245-330)||(1939365-1939451)
chr2 (245-315)||(17952749-17952820)
chr2 (292-330)||(10884554-10884592)
chr2 (245-315)||(18962086-18962157)
chr2 (280-330)||(22681218-22681268)
chr2 (478-532)||(25609894-25609948)
chr2 (255-315)||(11513859-11513920)
chr2 (245-310)||(29430707-29430772)
chr2 (264-321)||(33526009-33526066)
chr2 (292-329)||(40435015-40435052)
chr2 (255-330)||(6993757-6993833)
chr2 (290-330)||(9556236-9556276)
chr2 (474-538)||(11513990-11514054)
chr2 (259-315)||(16353828-16353883)
chr2 (255-330)||(37292380-37292456)
[»] chr7 (14 HSPs)
chr7 (245-329)||(28340878-28340963)
chr7 (269-330)||(1350275-1350336)
chr7 (475-524)||(8427108-8427157)
chr7 (264-323)||(3468585-3468644)
chr7 (274-329)||(25507330-25507385)
chr7 (255-313)||(31002722-31002781)
chr7 (253-330)||(2048075-2048152)
chr7 (269-315)||(5369739-5369785)
chr7 (492-538)||(11619070-11619116)
chr7 (264-330)||(29363489-29363555)
chr7 (280-330)||(38010701-38010751)
chr7 (264-314)||(47004058-47004108)
chr7 (290-326)||(21453291-21453327)
chr7 (256-315)||(40689034-40689094)
[»] chr4 (17 HSPs)
chr4 (246-329)||(55870375-55870459)
chr4 (248-315)||(53155218-53155285)
chr4 (245-315)||(54325085-54325156)
chr4 (245-330)||(24929444-24929530)
chr4 (467-525)||(47970383-47970441)
chr4 (264-311)||(30581729-30581776)
chr4 (280-315)||(52754587-52754622)
chr4 (264-330)||(7694043-7694109)
chr4 (272-330)||(42866047-42866105)
chr4 (245-330)||(49085940-49086026)
chr4 (255-311)||(8130135-8130192)
chr4 (487-528)||(20656146-20656187)
chr4 (255-330)||(11802495-11802571)
chr4 (290-330)||(12650317-12650357)
chr4 (263-311)||(24091433-24091481)
chr4 (244-330)||(27623585-27623675)
chr4 (475-527)||(50298610-50298662)
[»] chr8 (19 HSPs)
chr8 (264-330)||(29973052-29973118)
chr8 (181-330)||(4558686-4558835)
chr8 (269-330)||(10075584-10075645)
chr8 (255-330)||(31862454-31862530)
chr8 (264-315)||(28769387-28769438)
chr8 (252-324)||(34770850-34770923)
chr8 (248-315)||(30013172-30013240)
chr8 (290-329)||(6509337-6509376)
chr8 (275-330)||(11745685-11745740)
chr8 (264-311)||(12361163-12361210)
chr8 (279-330)||(44865597-44865648)
chr8 (245-330)||(9836887-9836973)
chr8 (293-330)||(8060669-8060706)
chr8 (293-330)||(30277278-30277315)
chr8 (255-330)||(4763879-4763955)
chr8 (290-330)||(8062326-8062366)
chr8 (294-330)||(25097387-25097423)
chr8 (290-330)||(29592206-29592246)
chr8 (278-330)||(39268537-39268589)
[»] chr1 (23 HSPs)
chr1 (245-326)||(48830113-48830195)
chr1 (272-325)||(41638499-41638552)
chr1 (269-315)||(8130412-8130458)
chr1 (269-330)||(15361689-15361750)
chr1 (264-329)||(25005831-25005896)
chr1 (293-330)||(51929808-51929845)
chr1 (255-330)||(27738213-27738289)
chr1 (245-315)||(4276684-4276755)
chr1 (245-315)||(4622044-4622115)
chr1 (291-330)||(25479579-25479618)
chr1 (255-329)||(28467342-28467416)
chr1 (264-330)||(10199441-10199507)
chr1 (272-330)||(44422678-44422736)
chr1 (245-314)||(49517021-49517091)
chr1 (270-315)||(4078197-4078242)
chr1 (257-314)||(28909954-28910011)
chr1 (266-311)||(47960676-47960721)
chr1 (248-315)||(4363680-4363748)
chr1 (264-328)||(17269221-17269285)
chr1 (496-528)||(27146463-27146495)
chr1 (245-308)||(29007771-29007835)
chr1 (270-330)||(33527180-33527240)
chr1 (264-328)||(35351010-35351074)
[»] chr5 (18 HSPs)
chr5 (245-327)||(14295457-14295540)
chr5 (245-315)||(18704084-18704154)
chr5 (255-330)||(16889696-16889772)
chr5 (264-329)||(3951586-3951651)
chr5 (255-330)||(38047888-38047964)
chr5 (264-310)||(32059642-32059688)
chr5 (483-537)||(36542199-36542253)
chr5 (248-330)||(41957484-41957565)
chr5 (293-330)||(3237093-3237130)
chr5 (245-329)||(28586800-28586885)
chr5 (255-315)||(32172614-32172675)
chr5 (226-298)||(35135727-35135800)
chr5 (245-313)||(39823171-39823240)
chr5 (290-330)||(1550894-1550934)
chr5 (255-330)||(15003547-15003623)
chr5 (290-330)||(29201530-29201570)
chr5 (476-528)||(33961779-33961831)
chr5 (475-515)||(37968972-37969012)
[»] chr3 (21 HSPs)
chr3 (245-315)||(25183036-25183107)
chr3 (264-330)||(24887316-24887382)
chr3 (245-316)||(24235730-24235802)
chr3 (269-325)||(48807684-48807740)
chr3 (247-329)||(1816536-1816619)
chr3 (295-330)||(21335677-21335712)
chr3 (263-330)||(23249528-23249595)
chr3 (245-315)||(37689432-37689503)
chr3 (256-330)||(38462243-38462318)
chr3 (248-330)||(1217833-1217914)
chr3 (269-315)||(2201104-2201150)
chr3 (491-524)||(18405757-18405790)
chr3 (475-524)||(22667498-22667547)
chr3 (475-524)||(22724137-22724186)
chr3 (475-524)||(24158442-24158491)
chr3 (476-525)||(44237513-44237562)
chr3 (272-328)||(11253481-11253536)
chr3 (274-330)||(20502101-20502157)
chr3 (294-330)||(24158536-24158572)
chr3 (273-321)||(33307494-33307542)
chr3 (269-329)||(43875624-43875684)
[»] chr6 (11 HSPs)
chr6 (245-314)||(2027455-2027525)
chr6 (269-329)||(2117379-2117439)
chr6 (255-326)||(281885-281957)
chr6 (255-330)||(1401071-1401146)
chr6 (245-315)||(1402947-1403018)
chr6 (493-528)||(31672451-31672486)
chr6 (256-324)||(14492264-14492333)
chr6 (245-313)||(33259767-33259836)
chr6 (485-525)||(733102-733142)
chr6 (492-524)||(1432251-1432283)
chr6 (290-330)||(3525145-3525185)
[»] scaffold0428 (1 HSPs)
scaffold0428 (245-313)||(3855-3924)
[»] scaffold0110 (1 HSPs)
scaffold0110 (264-328)||(4258-4322)


Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 13736655 - 13736247
Alignment:
Q  1 gaatgaaatgttgttgagttcatctggaattgtaaagtctgacaagtccaacaatttttcctgtgtgttcactaaaaagggtcagaaaggattcaatcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13736655 gaatgaaatgttgttgagttcatctggaattgtaaagtctgacaagtccaacaatttttcctgtgtgttcactaaaaagggtcagaaaggattcaatcag 13736556  T
Q  101 gattgtcttattgtttgggaggtatgcctaaatattcagtttccgaatttccttgtctatgattttagctctatttggatataaacagtttaattaagcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  13736555 gattgtcttattgtttgggaggtatgcctaaatattcagtttccgaatttccttgtctatgattttagctctatttggctataaacaatttaattaagcg 13736456  T
Q  201 catatagcataaacgtacttattgttaagtatttatgtagagaatatttttattacaaaagataaatgaagtcaaactattttcacatcagctataagct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13736455 catatagcataaacgtacttattgttaagtatttatgtagagaatatttttattacaaaagataaatgaagtcaaactattttcacatcagctataagct 13736356  T
Q  301 gttttcataagctatactagagagcttatgnnnnnnncttgaaaacagcttatagagatgttatgtcataagctatttcaataaccctagctgtactaga 400  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13736355 gttttcataagctatactagagagcttatgaaaataacttgaaaacagcttatagagatgttatgtcataagctgtttcaataaccctagctgtactaga 13736256  T
Q  401 gtagtttag 409  Q
    |||||||||    
T  13736255 gtagtttag 13736247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 382 - 561
Target Start/End: Complemental strand, 13736130 - 13735951
Alignment:
Q  382 taaccctagctgtactagagtagtttagcagtgccttttgaatcaaataggcgagccctttctgaatccgaaaggcgaacaacctgctttgcaaaacagt 481  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  13736130 taacactagctgtactagagtagtttagcagtgccttttgaatcaaataggcgagccctttcagaatccgaaaggcgaacaacccgctttgcaaaacagt 13736031  T
Q  482 atcataagtacttatgtgagtagataagctcaaataaaccaattcaagcaaaccctttcggctttcatcaccacaaaact 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  13736030 atcataagtacttatgtgagtagataagctcaaataaaccaattcaagcaaacccttttggctttcatcaccgcaaaact 13735951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 1939451 - 1939365
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatc-agctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||| ||| |||||||||||| | |||| |||||||||||| ||  |||||||| |||||||||||||||||||| |||||||||||    
T  1939451 tatttctataacaaaagataaaataaagtgaaactattttcatattgagctataa-ctgttttcataagctatactggagagcttatg 1939365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 17952820 - 17952749
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||| ||| |||||||||||| | ||||||||||||||||| || ||||| ||| ||||||||||||||||    
T  17952820 tatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcataagctat 17952749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 10884592 - 10884554
Alignment:
Q  292 ctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  10884592 ctataagctgttttcataagctatcctagagagcttatg 10884554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 18962157 - 18962086
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||||||| |||||||||||| | |||| ||||| |||||| || |||||||| || ||||||||||||||    
T  18962157 tatttttataacaaaagataaaataaagttaaactgttttcatataagctataaactattttcataagctat 18962086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 22681268 - 22681218
Alignment:
Q  280 ttttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||| || ||||||||||||||||||||| |||| ||||||| ||||||    
T  22681268 ttttcatataagctataagctgttttcataatctatcctagagaacttatg 22681218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 532
Target Start/End: Original strand, 25609894 - 25609948
Alignment:
Q  478 cagtatcataagtacttatgtgagtagataagctcaaataaaccaattcaagcaa 532  Q
    |||| ||| |||| ||||||| ||||||||||||||||||| ||||| |||||||    
T  25609894 cagtctcacaagttcttatgttagtagataagctcaaataagccaatgcaagcaa 25609948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 11513859 - 11513920
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    |||||||||||| | |||||||| | |||||| || ||||||||| ||||||||||||||||    
T  11513859 acaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataagctat 11513920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 29430707 - 29430772
Alignment:
Q  245 tatttttattacaaaagataaatgaagtcaaactattttcacatcagctataagctgttttcataa 310  Q
    ||||| ||| ||||||| ||||| |||||||||| |||||  || |||||||||||||| ||||||    
T  29430707 tatttctataacaaaagttaaataaagtcaaactgttttcttataagctataagctgttctcataa 29430772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 33526066 - 33526009
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactaga 321  Q
    |||| ||||||||||||||||| ||  |  ||||||| ||||||||||||||||||||    
T  33526066 aaataaagtcaaactattttcatatatgtaataagcttttttcataagctatactaga 33526009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 40435052 - 40435015
Alignment:
Q  292 ctataagctgttttcataagctatactagagagcttat 329  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  40435052 ctataagctgttttcataagttatactggagagcttat 40435015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 6993833 - 6993757
Alignment:
Q  255 acaaaagataaatgaag-tcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||  ||| ||||| ||| |||| || ||||||| | |||||||||||||||| || |||||||||||    
T  6993833 acaaaagataaaataaggtcaaattatattcatataagctataggttgttttcataagctatgcttgagagcttatg 6993757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 9556236 - 9556276
Alignment:
Q  290 agctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||| ||||||||||||||||| ||||| ||||||||    
T  9556236 agctataaactgttttcataagctatcctagaaagcttatg 9556276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 538
Target Start/End: Original strand, 11513990 - 11514054
Alignment:
Q  474 aaaacagtatcataagtacttatgtgagtagataagctcaaataaaccaattcaagcaaaccctt 538  Q
    |||||||| ||| |||| ||||||  ||||||||| ||||||||||||||| ||| ||| |||||    
T  11513990 aaaacagtctcacaagtgcttatgctagtagataatctcaaataaaccaatccaaacaatccctt 11514054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 16353828 - 16353883
Alignment:
Q  259 aagataaatgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||||||  |||||||||| |||||| || |||||||||||||||| |||||||||    
T  16353828 aagataaacaaagtcaaact-ttttcatataagctataagctgtttttataagctat 16353883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 37292456 - 37292380
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||| | |||| |||||||||||| || |||||| || ||||||| |||||||| || ||||| |||||    
T  37292456 acaaaagataaaataaagtaaaactattttcatataagctattagttgttttcttaagctatcctggagagtttatg 37292380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 28340963 - 28340878
Alignment:
Q  245 tatttttattacaaaagat-aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttat 329  Q
    ||||||||| | ||||||| ||||||||||||| | || ||| || |||||||||||||||||||||||||| |||||||||||||    
T  28340963 tatttttataataaaagatgaaatgaagtcaaattgttgtcatataagctataagctgttttcataagctatcctagagagcttat 28340878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 1350336 - 1350275
Alignment:
Q  269 aagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||| ||||||||| | ||||||||||||||||||| |||| ||  ||||||||||    
T  1350336 aagtcaaacttttttcacataatctataagctgttttcataaactatcctgaagagcttatg 1350275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 8427108 - 8427157
Alignment:
Q  475 aaacagtatcataagtacttatgtgagtagataagctcaaataaaccaat 524  Q
    ||||||| ||| |||||||||||| |||||||||||||||||||| ||||    
T  8427108 aaacagtctcacaagtacttatgttagtagataagctcaaataaatcaat 8427157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 3468585 - 3468644
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagaga 323  Q
    |||||||||||||||||||||  || || |||||||| ||||||||| |||| |||||||    
T  3468585 aaatgaagtcaaactattttcgtataagttataagcttttttcataatctatcctagaga 3468644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 25507330 - 25507385
Alignment:
Q  274 aaactattttcacatcagctataagctgttttcataagctatactagagagcttat 329  Q
    |||||||||||| || ||||||||| |||||||||||| ||| ||||| |||||||    
T  25507330 aaactattttcatataagctataagttgttttcataagttattctagaaagcttat 25507385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 31002722 - 31002781
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagct 313  Q
    |||||||||||| | |||||||| |||||||| || |||||||||||||||| |||||||    
T  31002722 acaaaagataaaataaagtcaaaatattttcatataagctataagctgttttgataagct 31002781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 330
Target Start/End: Complemental strand, 2048152 - 2048075
Alignment:
Q  253 ttacaaaagataaatgaa-gtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||||| || ||||||||  ||||| || ||||||||||| ||| |||||||||| ||||| ||||||||    
T  2048152 ttacaaaagataaattaaagtcaaactgatttcagataagctataagctttttacataagctat-ctagaaagcttatg 2048075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 5369785 - 5369739
Alignment:
Q  269 aagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    |||||||||| |||||| ||  |||||||||||||||||||||||||    
T  5369785 aagtcaaactgttttcatatatgctataagctgttttcataagctat 5369739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 538
Target Start/End: Complemental strand, 11619116 - 11619070
Alignment:
Q  492 cttatgtgagtagataagctcaaataaaccaattcaagcaaaccctt 538  Q
    ||||||| ||||||||||||||||||| ||||| ||| |||||||||    
T  11619116 cttatgtcagtagataagctcaaataagccaatccaaacaaaccctt 11619070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 29363489 - 29363555
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||| |||||||||| |||||| || || ||||||||||| ||||||| ||| || |||||||||||    
T  29363489 aaataaagtcaaactgttttcatattagttataagctgttatcataagttatcctggagagcttatg 29363555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 38010701 - 38010751
Alignment:
Q  280 ttttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||| || ||||||||||||||||||||| |||| ||||||| ||||||    
T  38010701 ttttcatataagctataagctgttttcataatctatcctagagaacttatg 38010751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 47004058 - 47004108
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagcta 314  Q
    |||| ||||||||||||||| | || | |||||||||||||||||||||||    
T  47004058 aaataaagtcaaactatttttatatgaactataagctgttttcataagcta 47004108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 21453291 - 21453327
Alignment:
Q  290 agctataagctgttttcataagctatactagagagct 326  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  21453291 agctataaactgttttcataagctatcctagagagct 21453327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 40689094 - 40689034
Alignment:
Q  256 caaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||||||||| | |||| ||| |||||||| || ||||||||||||| ||||||||||||    
T  40689094 caaaagataaaataaagttaaattattttcatataagctataagctgtgttcataagctat 40689034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 329
Target Start/End: Complemental strand, 55870459 - 55870375
Alignment:
Q  246 atttttattacaaaagat-aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttat 329  Q
    |||||||| ||||||||| |||| |||||||||| ||||||||| ||||||||| |||||||||||||||  | |||||||||||    
T  55870459 atttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcataagctaatcaagagagcttat 55870375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 53155218 - 53155285
Alignment:
Q  248 ttttattacaaaagataaatgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    |||||| ||||||||||||| ||||| ||||||||||| ||  ||||||| || ||||||||||||||    
T  53155218 ttttataacaaaagataaataaagtcgaactattttcatatatgctataaactattttcataagctat 53155285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 54325156 - 54325085
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||| |||||||||||||||| | |||||||||| |||||| || ||||||||||| |||||| |||||||    
T  54325156 tatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttcaaaagctat 54325085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 24929444 - 24929530
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||| ||| |||||||||||| | ||||| |||| |||||| |  ||||||||| ||||||||||| || ||||||||||||||||    
T  24929444 tatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaactctactagagagcttatg 24929530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 47970383 - 47970441
Alignment:
Q  467 gctttgcaaaacagtatcataagtacttatgtgagtagataagctcaaataaaccaatt 525  Q
    ||||| || |||||| ||| |||| ||||||| ||||||||||||||||||||||||||    
T  47970383 gctttccataacagtttcacaagtgcttatgtcagtagataagctcaaataaaccaatt 47970441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 30581776 - 30581729
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataag 311  Q
    |||||||||||||||||||||  || |||||||||||||||| |||||    
T  30581776 aaatgaagtcaaactattttcgtataagctataagctgttttaataag 30581729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 52754587 - 52754622
Alignment:
Q  280 ttttcacatcagctataagctgttttcataagctat 315  Q
    ||||||||| ||||||||||||||||||||||||||    
T  52754587 ttttcacataagctataagctgttttcataagctat 52754622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 7694109 - 7694043
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||||| ||||   || |||||||||||||||||||||| ||| || ||||| |||||    
T  7694109 aaatgaagtcaaactgtttttgtataagctataagctgttttcataagttatcctggagagtttatg 7694043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 42866047 - 42866105
Alignment:
Q  272 tcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||| |||| | || ||||||||| |||||||||||||||| || |||||||||||    
T  42866047 tcaaactgtttttatataagctataagttgttttcataagctatccttgagagcttatg 42866105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 49085940 - 49086026
Alignment:
Q  245 tatttttattacaaaagataaatgaa-gtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||| ||| ||||||||||||  || ||||||||||||||| |  || |||||| |||||||||||||||   |||||||||||||    
T  49085940 tatttatataacaaaagataaaataatgtcaaactattttcatacaagttataagttgttttcataagctaccttagagagcttatg 49086026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 8130135 - 8130192
Alignment:
Q  255 acaaaagataa-atgaagtcaaactattttcacatcagctataagctgttttcataag 311  Q
    ||||||||||| || |||||||| |||||||| || |||||||| |||||||||||||    
T  8130135 acaaaagataacataaagtcaaattattttcatataagctataaactgttttcataag 8130192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 528
Target Start/End: Original strand, 20656146 - 20656187
Alignment:
Q  487 aagtacttatgtgagtagataagctcaaataaaccaattcaa 528  Q
    |||||||||||  |||||||||||||||||||| ||||||||    
T  20656146 aagtacttatgacagtagataagctcaaataaatcaattcaa 20656187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 11802495 - 11802571
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||| | |||||||| | || |||||| ||||| ||| ||||||||||||||||  | |||||||||||    
T  11802495 acaaaagataaaataaagtcaaatttttctcacataagctacaagttgttttcataagctattatggagagcttatg 11802571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 12650357 - 12650317
Alignment:
Q  290 agctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||||||||||| |||| || |||||||||||    
T  12650357 agctataagctgttttcataacctatcctggagagcttatg 12650317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 24091433 - 24091481
Alignment:
Q  263 taaatgaagtcaaactattttcacatcagctataagctgttttcataag 311  Q
    ||||| |||||||| |||||||| || |||||||| |||||||||||||    
T  24091433 taaataaagtcaaattattttcatataagctataaactgttttcataag 24091481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 27623585 - 27623675
Alignment:
Q  244 atatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctat---aagctgttttcataagctatactagagagcttatg 330  Q
    |||||| ||| |||||||||||| | ||||||||||||||| | || ||||||   ||| |||||||||||| ||| || |||||||||||    
T  27623585 atatttgtataacaaaagataaaataaagtcaaactattttaatataagctataagaagttgttttcataagttatcctggagagcttatg 27623675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 527
Target Start/End: Original strand, 50298610 - 50298662
Alignment:
Q  475 aaacagtatcataagtacttatgtgagtagataagctcaaataaaccaattca 527  Q
    ||||||| ||| |||| ||||||| |||||||||||| ||||||| |||||||    
T  50298610 aaacagtctcacaagtgcttatgtcagtagataagctaaaataaatcaattca 50298662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 29973052 - 29973118
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||| |||||||||||||||||||| ||||||||| |||||||||||||||| || ||||| |||||    
T  29973052 aaataaagtcaaactattttcacataagctataagttgttttcataagctatccttgagagtttatg 29973118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 181 - 330
Target Start/End: Original strand, 4558686 - 4558835
Alignment:
Q  181 ataaacagtttaattaagcgcatatagcataaacgtacttattgt-taagtatttatgtagagaatatttttattacaaaagataaa-tgaagtcaaact 278  Q
    |||||||  ||||||| |||| ||||||||||||||  ||||| | ||||| |||||||| |   ||||| ||| | |||||||||| | |||| ||| |    
T  4558686 ataaacaacttaattacgcgcttatagcataaacgt--ttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaaatt 4558783  T
Q  279 attttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||| ||  |||||||||||||| |||||||||| ||||||||||||||    
T  4558784 attttcatatatgctataagctgtttccataagctatcctagagagcttatg 4558835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 10075645 - 10075584
Alignment:
Q  269 aagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||||| | || || |||||||| |||||||||||||| ||||||||||||||    
T  10075645 aagtcaaactatttttatataagttataagctattttcataagctatcctagagagcttatg 10075584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 31862454 - 31862530
Alignment:
Q  255 acaaaagataa-atgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||| || ||||||||||||| ||  || ||||||||| |||||||||||| ||| ||||||||||||||    
T  31862454 acaaaagataatataaagtcaaactattctcgtataagctataagatgttttcataagttatcctagagagcttatg 31862530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 28769438 - 28769387
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    |||| ||||||||||||||||  || ||||||||||||||||||||||||||    
T  28769438 aaattaagtcaaactattttcttataagctataagctgttttcataagctat 28769387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 324
Target Start/End: Original strand, 34770850 - 34770923
Alignment:
Q  252 attacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagag 324  Q
    ||||||||||||||| | |||||||| | ||||||  | ||||||||| |||||||||||||||| ||||||||    
T  34770850 attacaaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataagctatcctagagag 34770923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 30013172 - 30013240
Alignment:
Q  248 ttttattacaaaagat-aaatgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    |||||| ||||||| | |||| |||||||||| ||| || || ||||||||||||||||||||||||||    
T  30013172 ttttataacaaaaggtcaaattaagtcaaactgtttccatataagctataagctgttttcataagctat 30013240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 6509376 - 6509337
Alignment:
Q  290 agctataagctgttttcataagctatactagagagcttat 329  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  6509376 agctataagctgttttcataagctatcctggagagcttat 6509337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 11745740 - 11745685
Alignment:
Q  275 aactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||| ||||| ||| |||||||||||||||| ||||||||| |||| |||||||||    
T  11745740 aactgttttcccattagctataagctgtttttataagctatcctagtgagcttatg 11745685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 12361163 - 12361210
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataag 311  Q
    ||||||||||||| | |||||| || ||||||||||||||||||||||    
T  12361163 aaatgaagtcaaattgttttcatataagctataagctgttttcataag 12361210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 44865648 - 44865597
Alignment:
Q  279 attttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||| || |||||||||||| ||| |||||||||||||||||| |||||    
T  44865648 attttcatataagctataagctggttttataagctatactagagagtttatg 44865597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 9836973 - 9836887
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||| ||||  |||||| | ||||||||||||||||| || || || || |||||||||||||||||  | |||||||||||    
T  9836973 tatttttataacaactgataaagtaaagtcaaactattttcatataagttacaacctgttttcataagctatcttggagagcttatg 9836887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 8060669 - 8060706
Alignment:
Q  293 tataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||||||||||| || ||||||||||||||    
T  8060669 tataagctgttttcataagcaatcctagagagcttatg 8060706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 30277315 - 30277278
Alignment:
Q  293 tataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  30277315 tataagctgttttcataagctatcctagagagtttatg 30277278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 4763879 - 4763955
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||| | || ||||||  ||||||||| ||||||||||||||||  |||||||| ||  ||||||||||    
T  4763879 acaaaagataaaataaattcaaaccgttttcacataagctataagctgtttttctaagctatcctgaagagcttatg 4763955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 8062326 - 8062366
Alignment:
Q  290 agctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||||||||||||||||  ||||||| |||||    
T  8062326 agctataagctgttttcataagctatcttagagagattatg 8062366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 25097387 - 25097423
Alignment:
Q  294 ataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||||||||||||| || |||||||||||    
T  25097387 ataagctgttttcataagctatcctggagagcttatg 25097423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 29592246 - 29592206
Alignment:
Q  290 agctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||| ||||||||||||||||| | ||||||||||||    
T  29592246 agctataatctgttttcataagctatcccagagagcttatg 29592206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 39268589 - 39268537
Alignment:
Q  278 tattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||| || || || |||||||||||||||||| | ||||||||||||||    
T  39268589 tattttcatataagttaaaagctgttttcataagcttttctagagagcttatg 39268537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 48830195 - 48830113
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagct 326  Q
    ||||| |||||| ||||||||| | ||||||||||||||||| || |||||||| ||||||||||||||||| ||| ||||||    
T  48830195 tatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcataagctattctaaagagct 48830113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 41638499 - 41638552
Alignment:
Q  272 tcaaactattttcacatcagctataagctgttttcataagctatactagagagc 325  Q
    |||||||| ||||| || |||||| |||||||||||||||||||||||||||||    
T  41638499 tcaaactactttcatataagctattagctgttttcataagctatactagagagc 41638552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 8130412 - 8130458
Alignment:
Q  269 aagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  8130412 aagtcaaactgttttcacataagctataagttgttttcataagctat 8130458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 15361689 - 15361750
Alignment:
Q  269 aagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||| |||||||| || |||||||||||||||||||||| ||| || ||||| |||||    
T  15361689 aagtcaaattattttcatataagctataagctgttttcataagatattcttgagagtttatg 15361750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 329
Target Start/End: Complemental strand, 25005896 - 25005831
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttat 329  Q
    ||||||||||||  | |||||| || ||||||||| |||||||||||||||| || ||||||||||    
T  25005896 aaatgaagtcaacttgttttcatataagctataagttgttttcataagctatcctggagagcttat 25005831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 51929845 - 51929808
Alignment:
Q  293 tataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  51929845 tataagctgttttcataagctattctagagagcttatg 51929808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 27738289 - 27738213
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||| | |||||||| | |||||| || ||||||||  ||||||||||||||||||  |||||||||||    
T  27738289 acaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataagctatacaggagagcttatg 27738213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 4276755 - 4276684
Alignment:
Q  245 tatttttattacaaaagataa-atgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||| ||| ||||||||||| || |||||| ||| ||||||||| |||||||| ||||| |||||||||||    
T  4276755 tatttctataacaaaagataatataaagtcatactgttttcacataagctataacctgttctcataagctat 4276684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 4622044 - 4622115
Alignment:
Q  245 tatttttattacaaaagat-aaatgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||| ||| ||||||||| ||||||| ||||||| |||||| || ||||||||||||||| |||| |||||    
T  4622044 tatttctataacaaaagatcaaatgaattcaaactcttttcatataagctataagctgtttccatatgctat 4622115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 25479579 - 25479618
Alignment:
Q  291 gctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  25479579 gctataagttgttttcataagctatcctagagagcttatg 25479618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 28467416 - 28467342
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttat 329  Q
    |||||||||||| | |||||||| |||||||| || ||||| ||| |||||||||||||||  |||||||||||||    
T  28467416 acaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataagcta-gctagagagcttat 28467342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 10199507 - 10199441
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||| ||||||||||||||||  || | | ||||||| ||||||||||||||  |||||||||||||    
T  10199507 aaataaagtcaaactattttcgtataatcgataagcttttttcataagctattttagagagcttatg 10199441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 44422678 - 44422736
Alignment:
Q  272 tcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||| |||||| || ||||||||||| |||| ||||||||| || |||||||||||    
T  44422678 tcaaactgttttcatataagctataagctatttttataagctatcctggagagcttatg 44422736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 49517021 - 49517091
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagcta 314  Q
    ||||| ||| |||||||||||| | |||||||| | ||||||  | |||||||||||||||||||||||||    
T  49517021 tatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataagcta 49517091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 4078242 - 4078197
Alignment:
Q  270 agtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    |||||||||||||||| || | ||||||| ||||||||||||||||    
T  4078242 agtcaaactattttcatataatctataagttgttttcataagctat 4078197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 28909954 - 28910011
Alignment:
Q  257 aaaagataaatgaagtcaaactattttcacatcagctataagctgttttcataagcta 314  Q
    ||||||||||| ||||||||||||||| | |||| |||||   |||||||||||||||    
T  28909954 aaaagataaataaagtcaaactattttaatatcaactatacattgttttcataagcta 28910011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 47960721 - 47960676
Alignment:
Q  266 atgaagtcaaactattttcacatcagctataagctgttttcataag 311  Q
    ||||| |||||||||||||| || |||||||||| |||||||||||    
T  47960721 atgaaatcaaactattttcatataagctataagccgttttcataag 47960676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 4363748 - 4363680
Alignment:
Q  248 ttttattacaaaagat-aaatgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    |||||| ||||||||| |||| | |||||||| |||||| || |||||||| || ||||||||||||||    
T  4363748 ttttataacaaaagattaaataatgtcaaactgttttcatataagctataacctattttcataagctat 4363680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 17269221 - 17269285
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagctta 328  Q
    |||| |||||||| | |||||| || ||| ||||| |||||||||||||||| || |||||||||    
T  17269221 aaataaagtcaaattgttttcatataagcaataagttgttttcataagctatcctggagagctta 17269285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 528
Target Start/End: Original strand, 27146463 - 27146495
Alignment:
Q  496 tgtgagtagataagctcaaataaaccaattcaa 528  Q
    |||||||||||||||||||||| ||||||||||    
T  27146463 tgtgagtagataagctcaaatagaccaattcaa 27146495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 29007835 - 29007771
Alignment:
Q  245 tatttttattacaaaagataaatgaa-gtcaaactattttcacatcagctataagctgttttcat 308  Q
    ||||| ||| |||||||| |||| || ||||||||||||||| || ||||||||| |||||||||    
T  29007835 tatttctataacaaaagaaaaattaaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 33527240 - 33527180
Alignment:
Q  270 agtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||| |||||| || | |||||||||||||||||||| ||| || |||| ||||||    
T  33527240 agtcaaactgttttcatataatctataagctgttttcataagttatcctcgagatcttatg 33527180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 35351010 - 35351074
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagctta 328  Q
    |||| |||||||||| || | |||| ||||||||| ||| ||||||| |||| ||||||||||||    
T  35351010 aaataaagtcaaacttttcttacattagctataagttgtcttcataaactatcctagagagctta 35351074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 14295457 - 14295540
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagctt 327  Q
    ||||| ||| |||||||||||| | |||||||||| |||||| || ||||||||||||||||| |||||||| || ||||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagctatcctggagagctt 14295540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 18704154 - 18704084
Alignment:
Q  245 tatttttattacaaaagataaatgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||| ||| ||||||||||||| ||||||| ||||||| | || ||||||||| ||||||||||||||||    
T  18704154 tatttctataacaaaagataaataaagtcaagctatttttatataagctataagttgttttcataagctat 18704084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 16889696 - 16889772
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||| | |||||||||| |||| | |  |||||||||||||||||||||||||| |||||||| |||||    
T  16889696 acaaaagataaacttaagtcaaactgtttttatagaagctataagctgttttcataagctatgctagagagtttatg 16889772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 3951586 - 3951651
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttat 329  Q
    ||||||| ||||| |||||||| || |||||||||||||||| ||||||||| || ||||| ||||    
T  3951586 aaatgaaatcaaattattttcatattagctataagctgtttttataagctatcctggagagattat 3951651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 38047964 - 38047888
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||| | |||||||| |||||||| ||   ||||| |||||||||||||||||| || |||||||||||    
T  38047964 acaaaagataaaataaagtcaaattattttcatatatactatatgctgttttcataagctatcctggagagcttatg 38047888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 32059688 - 32059642
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataa 310  Q
    |||| |||||||||| |||||| || |||||||||||||||||||||    
T  32059688 aaataaagtcaaactgttttcatataagctataagctgttttcataa 32059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 537
Target Start/End: Complemental strand, 36542253 - 36542199
Alignment:
Q  483 tcataagtacttatgtgagtagataagctcaaataaaccaattcaagcaaaccct 537  Q
    |||||||| ||||||| |||||||||||||||| || ||||||||| || |||||    
T  36542253 tcataagtgcttatgttagtagataagctcaaacaagccaattcaaacataccct 36542199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 41957565 - 41957484
Alignment:
Q  248 ttttattacaaaagataaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||| |||||||| ||||||||| ||| | ||||||  | || ||||||||||||||||||||||| || |||| ||||||    
T  41957565 ttttataacaaaaga-aaatgaagttaaattgttttcatgtaagttataagctgttttcataagctatccttgagaacttatg 41957484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 3237093 - 3237130
Alignment:
Q  293 tataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  3237093 tataagctgttttcataagctatcctaaagagcttatg 3237130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 28586885 - 28586800
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttat 329  Q
    ||||| ||| |||||||||||| | |||||||||| |||||| || |  ||||||||||||| |  |||||| |||||||||||||    
T  28586885 tatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgttttgacgagctatcctagagagcttat 28586800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 32172614 - 32172675
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    |||||||||||| |||||||||  | ||| || || ||||||||||||||||||||||||||    
T  32172614 acaaaagataaaatgaagtcaagttgtttacatataagctataagctgttttcataagctat 32172675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 35135800 - 35135727
Alignment:
Q  226 taagtatttatgtagagaatatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataag 298  Q
    ||||| |||||||| |  |||||| ||| |||||||||||| | ||||||||||||||||| || |||||||||    
T  35135800 taagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataag 35135727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 39823240 - 39823171
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagct 313  Q
    ||||| ||| |||||||||||| | ||||||||||| ||||| || ||||| ||| ||||||||||||||    
T  39823240 tatttatataacaaaagataaaataaagtcaaactactttcatataagctacaagttgttttcataagct 39823171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 1550894 - 1550934
Alignment:
Q  290 agctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||||||||||||| ||||||  ||||||||||    
T  1550894 agctataagctgttttcataagttatactgaagagcttatg 1550934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 15003623 - 15003547
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||| | || ||||||| | |||| || |||||||||  ||||||||||||||| | ||||||||||||    
T  15003623 acaaaagataaaataaaatcaaactctcttcatataagctataagtggttttcataagctatccaagagagcttatg 15003547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 29201530 - 29201570
Alignment:
Q  290 agctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||||||||||| |||| || |||||||||||    
T  29201530 agctataagctgttttcataacctatcctggagagcttatg 29201570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 33961779 - 33961831
Alignment:
Q  476 aacagtatcataagtacttatgtgagtagataagctcaaataaaccaattcaa 528  Q
    |||||| |||||||| |||||||  ||||||||||||||||||  ||||||||    
T  33961779 aacagtctcataagtgcttatgtccgtagataagctcaaataattcaattcaa 33961831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 37968972 - 37969012
Alignment:
Q  475 aaacagtatcataagtacttatgtgagtagataagctcaaa 515  Q
    ||||||| ||| |||||||||||| ||||||||||||||||    
T  37968972 aaacagtttcacaagtacttatgtcagtagataagctcaaa 37969012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 25183107 - 25183036
Alignment:
Q  245 tatttttattacaaaagat-aaatgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||||||| ||||||||| |||| |||| || ||||||||| || ||||||||||||||||||||||||||    
T  25183107 tatttttataacaaaagattaaataaagttaagctattttcatatgagctataagctgttttcataagctat 25183036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 24887382 - 24887316
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||| |||||||||| | |||| || ||||| |||||||||||||||||||| || |||||||||||    
T  24887382 aaataaagtcaaactgtattcatataagctaaaagctgttttcataagctatcctggagagcttatg 24887316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 24235802 - 24235730
Alignment:
Q  245 tatttttattacaaaagataa-atgaagtcaaactattttcacatcagctataagctgttttcataagctata 316  Q
    ||||| ||| ||||||||||| || ||||||||||||||  | || ||||||||| |||||||||||||||||    
T  24235802 tatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcataagctata 24235730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 48807684 - 48807740
Alignment:
Q  269 aagtcaaactattttcacatcagctataagctgttttcataagctatactagagagc 325  Q
    ||||||||||||||||| |  ||||||||| |||||||||||| ||| |||||||||    
T  48807684 aagtcaaactattttcatagaagctataagttgttttcataagttattctagagagc 48807740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 1816536 - 1816619
Alignment:
Q  247 tttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttat 329  Q
    ||||||| | |||||||||| | |||||||||| ||||   || || |||||| ||||||||||||||||||| ||||||||||    
T  1816536 tttttataataaaagataaaataaagtcaaactgtttttgtataagatataagttgttttcataagctatactggagagcttat 1816619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 330
Target Start/End: Original strand, 21335677 - 21335712
Alignment:
Q  295 taagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||||||||||||||||||| ||||||    
T  21335677 taagctgttttcataagctatactagagaacttatg 21335712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 23249528 - 23249595
Alignment:
Q  263 taaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||||||| |||| | || || |||||| ||||||||||||||||  |||| ||||||||    
T  23249528 taaatgaagtcaaactgtttttatataagatataagttgttttcataagctatcttagaaagcttatg 23249595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 37689503 - 37689432
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||||||| |||||||||||| | |||| ||| |||||||| || |||||||| || ||||||||||||||    
T  37689503 tatttttataacaaaagataaagtaaagttaaattattttcatataagctataaactattttcataagctat 37689432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 38462243 - 38462318
Alignment:
Q  256 caaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||| | |||||||||| |||||| ||  ||||||| ||||||||||||||||| | ||| ||||||||    
T  38462243 caaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcataagctatccaagatagcttatg 38462318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 1217914 - 1217833
Alignment:
Q  248 ttttattacaaaagataaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||| |||||||| ||||||||| ||| | ||||||  | || ||||||||||||||||||||||| || |||| ||||||    
T  1217914 ttttataacaaaaga-aaatgaagttaaattgttttcatgtaagttataagctgttttcataagctatccttgagaacttatg 1217833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 2201104 - 2201150
Alignment:
Q  269 aagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    |||||||||| |||||| || ||||||||||||||||||| ||||||    
T  2201104 aagtcaaactgttttcatataagctataagctgttttcattagctat 2201150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 524
Target Start/End: Complemental strand, 18405790 - 18405757
Alignment:
Q  491 acttatgtgagtagataagctcaaataaaccaat 524  Q
    |||||||| |||||||||||||||||||||||||    
T  18405790 acttatgtcagtagataagctcaaataaaccaat 18405757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 22667498 - 22667547
Alignment:
Q  475 aaacagtatcataagtacttatgtgagtagataagctcaaataaaccaat 524  Q
    ||||||| ||| |||| ||||||| ||||||||||||||||||| |||||    
T  22667498 aaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaat 22667547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 22724137 - 22724186
Alignment:
Q  475 aaacagtatcataagtacttatgtgagtagataagctcaaataaaccaat 524  Q
    ||||||| ||| |||| ||||||| ||||||||||||||||||| |||||    
T  22724137 aaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaat 22724186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 24158491 - 24158442
Alignment:
Q  475 aaacagtatcataagtacttatgtgagtagataagctcaaataaaccaat 524  Q
    ||||||| ||| |||||||||||| |||||||||||| |||||| |||||    
T  24158491 aaacagtttcacaagtacttatgtcagtagataagcttaaataagccaat 24158442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 44237513 - 44237562
Alignment:
Q  476 aacagtatcataagtacttatgtgagtagataagctcaaataaaccaatt 525  Q
    |||||| ||| |||| ||||||| ||||||||| ||||||||||||||||    
T  44237513 aacagtttcacaagtgcttatgtcagtagataaactcaaataaaccaatt 44237562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 11253481 - 11253536
Alignment:
Q  272 tcaaactattttcacatcagctataagctgttttcataagctatactagagagctta 328  Q
    ||||||| | |||| || ||||||||||||||| |||||||||| ||||||||||||    
T  11253481 tcaaactgtattcatataagctataagctgttt-cataagctatcctagagagctta 11253536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 20502157 - 20502101
Alignment:
Q  274 aaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||| |||||| ||  ||||||||||||||||||||||||| ||  ||||||||||    
T  20502157 aaactgttttcatatacgctataagctgttttcataagctatcctgaagagcttatg 20502101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 24158572 - 24158536
Alignment:
Q  294 ataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||||||||||||| || |||||||||||    
T  24158572 ataagctgttttcataagctatcctggagagcttatg 24158536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 33307542 - 33307494
Alignment:
Q  273 caaactattttcacatcagctataagctgttttcataagctatactaga 321  Q
    ||||||||||| | || || |||||| ||||||||||||||||||||||    
T  33307542 caaactatttttatataagttataagatgttttcataagctatactaga 33307494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 43875624 - 43875684
Alignment:
Q  269 aagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttat 329  Q
    |||||||||| || ||| || ||||||||| ||||||||||||||||  | ||||||||||    
T  43875624 aagtcaaactgttctcatataagctataagttgttttcataagctatcatggagagcttat 43875684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 2027525 - 2027455
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagcta 314  Q
    ||||||||| |||||||||||| | ||||||||||||||||| || | |||||||||||| ||||||||||    
T  2027525 tatttttataacaaaagataaaataaagtcaaactattttcatataacctataagctgttctcataagcta 2027455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 2117379 - 2117439
Alignment:
Q  269 aagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttat 329  Q
    ||||||||||||||||| || | ||||||| |||||||||||| ||| |||||||||||||    
T  2117379 aagtcaaactattttcatataatctataagttgttttcataagttatcctagagagcttat 2117439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 281957 - 281885
Alignment:
Q  255 acaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagct 326  Q
    |||||||||||| | |||||||  | |||||| || ||||||||||||| |||||||||||| ||||||||||    
T  281957 acaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataagctatcctagagagct 281885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 1401071 - 1401146
Alignment:
Q  255 acaaaagataaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagcttatg 330  Q
    ||||||||||||| || |||||||  |||   || ||||||||||||||||||||||||||  | |||||||||||    
T  1401071 acaaaagataaataaaatcaaactgctttagtataagctataagctgttttcataagctatcatggagagcttatg 1401146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 1402947 - 1403018
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctat 315  Q
    ||||| ||| |||||||||||| | |||| |||||||||||| || ||||||||  ||||||||||||||||    
T  1402947 tatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctat 1403018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 528
Target Start/End: Complemental strand, 31672486 - 31672451
Alignment:
Q  493 ttatgtgagtagataagctcaaataaaccaattcaa 528  Q
    |||||||||||||||| |||||||||||||||||||    
T  31672486 ttatgtgagtagataaactcaaataaaccaattcaa 31672451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 14492264 - 14492333
Alignment:
Q  256 caaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagag 324  Q
    ||||||||||| |||||||||| | |||| | |  |||||||||||||||||||||| ||| ||||||||    
T  14492264 caaaagataaaatgaagtcaaattgttttgatacaagctataagctgttttcataagttatcctagagag 14492333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 33259767 - 33259836
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagct 313  Q
    ||||||||| |||||||||||| |||||||| ||| |||||  ||  |||||||||| ||||||||||||    
T  33259767 tatttttataacaaaagataaattgaagtcatactgttttcctatatgctataagctattttcataagct 33259836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 525
Target Start/End: Complemental strand, 733142 - 733102
Alignment:
Q  485 ataagtacttatgtgagtagataagctcaaataaaccaatt 525  Q
    |||||| ||||||  ||||||||||||||||||||||||||    
T  733142 ataagtgcttatggtagtagataagctcaaataaaccaatt 733102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 524
Target Start/End: Original strand, 1432251 - 1432283
Alignment:
Q  492 cttatgtgagtagataagctcaaataaaccaat 524  Q
    |||||||||||||||||||| ||||||||||||    
T  1432251 cttatgtgagtagataagctaaaataaaccaat 1432283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 3525145 - 3525185
Alignment:
Q  290 agctataagctgttttcataagctatactagagagcttatg 330  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  3525145 agctataagctgtttttatatgctatcctagagagcttatg 3525185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 3855 - 3924
Alignment:
Q  245 tatttttattacaaaagataaa-tgaagtcaaactattttcacatcagctataagctgttttcataagct 313  Q
    ||||||||| |||||||||||| |||||||| ||| |||||  ||  |||||||||| ||||||||||||    
T  3855 tatttttataacaaaagataaactgaagtcatactgttttcctatatgctataagctattttcataagct 3924  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 4322 - 4258
Alignment:
Q  264 aaatgaagtcaaactattttcacatcagctataagctgttttcataagctatactagagagctta 328  Q
    |||| |||||||||  |||||| || | |||||||||||||| ||||||||| ||||| ||||||    
T  4322 aaataaagtcaaaccgttttcatataaactataagctgttttaataagctatgctagaaagctta 4258  T

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