View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_70 (Length: 299)
Name: NF13777_low_70
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 32595770 - 32596040
Alignment:
| Q |
19 |
attatagataaggttagattaactctgcatagtgcaggggtgggtggtggatcagatcaagtacacaattcacaattattctactacattcactttacag |
118 |
Q |
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| T |
32595770 |
attatagataaggttagattaactctgcatagtgcaggggtgggtggtggatcagatcaagtacacagttcacaattattctactacattcactttacag |
32595869 |
T |
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| Q |
119 |
ttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctgtcctggctgcaacttgcgttgtgtctctctctacaannnnn |
218 |
Q |
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| T |
32595870 |
ttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctgtcctggctgcaacttgcgttgtgtctctctctacaattttt |
32595969 |
T |
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| Q |
219 |
nnccttgccgcttctgcttgttgagctttttcttttacgattaagtcaaccactgacatccttcttttcat |
289 |
Q |
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| T |
32595970 |
ttccttgccgcttctgcttgttgagctttttcttttacaattaagtcaaccactgacatccttcttttcat |
32596040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 255
Target Start/End: Original strand, 32600378 - 32600597
Alignment:
| Q |
25 |
gataaggttagattaactctgcatagtgcaggggtgggtggtggatcagatcaagtacacaattcacaattattctactacattcactttacagttattg |
124 |
Q |
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| T |
32600378 |
gataaggttagattgactctgcatagtgcagggatgg----tggatcagataaagcacaca-------attattctactacattccctttacagttattg |
32600466 |
T |
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| Q |
125 |
agttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctgtcctggctgcaacttgcgttgtgtctctctctacaannnnnnncctt |
224 |
Q |
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| T |
32600467 |
agttgttgaaagccactaattttccaacgcacgtttagccttctccagtgctgtcctggctgcaacttgctttgtgtctctctctacaaaaaatttcctt |
32600566 |
T |
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| Q |
225 |
gccgcttctgcttgttgagctttttctttta |
255 |
Q |
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| T |
32600567 |
gccgcttcggcttgtcgagttttatctttta |
32600597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 31784076 - 31784213
Alignment:
| Q |
75 |
tcaagtacacaattcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtg |
174 |
Q |
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| T |
31784076 |
tcaagtacacaattcacgattattctactacaatcactacacaattattgagttgttgtaaggaactaattttccaatgcacgtttagcattctccaacg |
31784175 |
T |
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| Q |
175 |
ctgtcctggctgcaacttgcgttgtgtctctctctaca |
212 |
Q |
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| T |
31784176 |
ctgtcttggctgcaatttgctttgtgtctctctgtaca |
31784213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 32802397 - 32802263
Alignment:
| Q |
78 |
agtacacaattcacaattattctactacattcactttacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctg |
177 |
Q |
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|||||||||||||||||||||||||| |||||||| ||| |||||||||| ||| || |||| |||||||||||||||||||| ||||||| |||| |
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| T |
32802397 |
agtacacaattcacaattattctacttcattcactacacaattattgagttgttgaaaggaactaattttccaatgcacgtttagcattctccaacgctg |
32802298 |
T |
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| Q |
178 |
tcctggctgcaacttgcgttgtgtctctctctaca |
212 |
Q |
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| T |
32802297 |
tcttggctgaaatttgctttgtgtctctctctaca |
32802263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 37391803 - 37391704
Alignment:
| Q |
114 |
tacagttattgagttattgtaaaccactacttttccaatgcacgtttagccttctccagtgctgtcctggctgcaacttgcgttgtgtctctctctacaa |
213 |
Q |
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|||| |||||||||| |||||| | || |||||||||||||||| ||| ||||||| || ||||||| |||||| ||| ||||||| |||||||||| |
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| T |
37391803 |
tacatttattgagttgttgtaaggaaataattttccaatgcacgttaagcattctccaatgttgtcctgactgcaatttgatttgtgtcgctctctacaa |
37391704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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