View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_71 (Length: 298)

Name: NF13777_low_71
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_71
NF13777_low_71
[»] chr2 (4 HSPs)
chr2 (69-276)||(10850851-10851056)
chr2 (69-276)||(10878365-10878570)
chr2 (143-269)||(43724873-43724998)
chr2 (117-179)||(32964703-32964765)
[»] chr3 (2 HSPs)
chr3 (121-269)||(16723931-16724078)
chr3 (240-268)||(26150423-26150451)
[»] scaffold2079 (1 HSPs)
scaffold2079 (116-275)||(64-220)
[»] chr7 (7 HSPs)
chr7 (116-174)||(2785352-2785410)
chr7 (116-179)||(6241880-6241943)
chr7 (122-185)||(2701985-2702048)
chr7 (240-275)||(2958094-2958129)
chr7 (121-191)||(2958144-2958214)
chr7 (133-215)||(22618946-22619028)
chr7 (127-191)||(6880962-6881026)
[»] chr4 (1 HSPs)
chr4 (125-191)||(32205236-32205302)
[»] chr1 (3 HSPs)
chr1 (117-191)||(47543427-47543500)
chr1 (118-275)||(19352215-19352368)
chr1 (127-179)||(10682757-10682809)
[»] chr5 (4 HSPs)
chr5 (119-226)||(26351765-26351872)
chr5 (123-186)||(41488292-41488355)
chr5 (116-190)||(36270050-36270124)
chr5 (123-186)||(41489993-41490056)
[»] chr6 (1 HSPs)
chr6 (134-178)||(3069931-3069975)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 69 - 276
Target Start/End: Complemental strand, 10851056 - 10850851
Alignment:
Q  69 tacttttgtgaattggtttgcactaatttcactgtaattcgtcgagtcgaaccgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10851056 tacttttgtgaattggtttgcactaatttcactgtaattcgtcgagtcgaaccgagacaagtgggtgaagattgaagaaagacgaagaagaggttgagta 10850957  T
Q  169 ggagataaaagtgaaagaaaaacttcaggtggggcaaatacattttgcaagaaaaccttttttgagcctttgagaaagagaacgtctcttgcaaaataac 268  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10850956 ggagataaaa--gaaagaaaaacttcaggtggggcgaatacattttgcaagaaaaccttttttgagcctttgagaaagaggacgtctcttgcaaaataac 10850859  T
Q  269 attgatac 276  Q
    ||||||||    
T  10850858 attgatac 10850851  T

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Target: chr2; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 69 - 276
Target Start/End: Complemental strand, 10878570 - 10878365
Alignment:
Q  69 tacttttgtgaattggtttgcactaatttcactgtaattcgtcgagtcgaaccgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10878570 tacttttgtgaattggtttgcactaatttcactgtaattcgtcgagttgaaccgagacaagtgggtgaagattgaagaaagacgaagaagaggttgagta 10878471  T
Q  169 ggagataaaagtgaaagaaaaacttcaggtggggcaaatacattttgcaagaaaaccttttttgagcctttgagaaagagaacgtctcttgcaaaataac 268  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10878470 ggagataaaa--gaaagaaaaacttcaggtggggcgaatacattttgcaagaaaaccttttttgagcctttgagaaagaggacgtctcttgcaaaataac 10878373  T
Q  269 attgatac 276  Q
    ||||||||    
T  10878372 attgatac 10878365  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 269
Target Start/End: Complemental strand, 43724998 - 43724873
Alignment:
Q  143 aagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaacttcaggtggggcaaatacattttgcaagaaaaccttttttgagcctttgag 242  Q
    |||||||  |||||| ||||| ||||||| ||||||| ||||||||||| || | ||  |||||||  ||||||  |||||||| |||  ||  || |||    
T  43724998 aagaaagatgaagaataggtttagtaggaaataaaagagaaagaaaaacctctgttgtagcaaataatttttgcgggaaaacctatttaaagt-ttggag 43724900  T
Q  243 aaagagaacgtctcttgcaaaataaca 269  Q
    |||||||||||||||||||||||||||    
T  43724899 aaagagaacgtctcttgcaaaataaca 43724873  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 32964765 - 32964703
Alignment:
Q  117 gaaccgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaag 179  Q
    ||||||||||||||| ||||| || ||| ||||  ||||||||||||||||||||| ||||||    
T  32964765 gaaccgagacaagtgagtgaaaatcgaataaagatgaagaagaggttgagtaggagctaaaag 32964703  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 269
Target Start/End: Original strand, 16723931 - 16724078
Alignment:
Q  121 cgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaacttcaggtggggcaaatacattttgcaaga 220  Q
    ||||||||||| ||||| ||||||||||   |||||||||||||||||||||||||| | ||||||||||  || ||||  ||| ||| ||||| | |||    
T  16723931 cgagacaagtgagtgaatattgaagaaacatgaagaagaggttgagtaggagataaatgagaaagaaaaatatctggtgtagcagataaatttt-ctaga 16724029  T
Q  221 aaaccttttttgagcctttgagaaagagaacgtctcttgcaaaataaca 269  Q
    |||| || |||||  ||| ||||||||||||||||  |||||| |||||    
T  16724030 aaacattctttgaagcttggagaaagagaacgtcttctgcaaagtaaca 16724078  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Original strand, 26150423 - 26150451
Alignment:
Q  240 gagaaagagaacgtctcttgcaaaataac 268  Q
    |||||||||||||||||||||||||||||    
T  26150423 gagaaagagaacgtctcttgcaaaataac 26150451  T

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Target: scaffold2079 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 275
Target Start/End: Original strand, 64 - 220
Alignment:
Q  116 cgaaccgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaacttcaggtggggcaaatacattttg 215  Q
    |||||||| |||||||||||||||| ||||||||  |||||||| ||| ||||| ||||||||| |||| |||||  || ||||  ||||||  ||||||    
T  64 cgaaccgatacaagtgggtgaagatcgaagaaagatgaagaagaagttaagtagaagataaaagagaaaaaaaaa--tccggtgtagcaaatcaattttg 161  T
Q  216 caagaaaaccttttttgagcctttgagaaagagaacgtctcttgcaaaataacattgata 275  Q
     | ||||||| | |||||   || |||||||| |  ||||||||||||||||||| ||||    
T  162 taggaaaacc-tctttgaagtttggagaaagaaatagtctcttgcaaaataacatggata 220  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 2785410 - 2785352
Alignment:
Q  116 cgaaccgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagat 174  Q
    ||||||| ||||||||  ||||||||||||||||  |||||||||||||||||||||||    
T  2785410 cgaaccgggacaagtgaatgaagattgaagaaagaggaagaagaggttgagtaggagat 2785352  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 6241880 - 6241943
Alignment:
Q  116 cgaaccgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaag 179  Q
    |||||||| |||||||||||||||| ||||||||  |||||||| ||| ||||| |||||||||    
T  6241880 cgaaccgatacaagtgggtgaagatcgaagaaagatgaagaagaagttaagtagaagataaaag 6241943  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 2702048 - 2701985
Alignment:
Q  122 gagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaag 185  Q
    ||||||| |||||||| |||||||||||  ||||| ||||||||||| |||||| ||| |||||    
T  2702048 gagacaattgggtgaaaattgaagaaagatgaagatgaggttgagtaagagatacaagagaaag 2701985  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 2958129 - 2958094
Alignment:
Q  240 gagaaagagaacgtctcttgcaaaataacattgata 275  Q
    |||||||||||||||| |||||||||||||||||||    
T  2958129 gagaaagagaacgtcttttgcaaaataacattgata 2958094  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 2958214 - 2958144
Alignment:
Q  121 cgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaac 191  Q
    |||| |||||| |||||||| ||||||||  |||||  | ||||| ||||||||||||| |||||||||||    
T  2958214 cgaggcaagtgagtgaagatcgaagaaagaggaagacaatgttgaataggagataaaagagaaagaaaaac 2958144  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 22618946 - 22619028
Alignment:
Q  133 gtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaacttcaggtggggcaaatacattttg 215  Q
    |||||||||||||||||  ||| | ||||||||||| ||  |||||| ||||||||||| || ||||  ||||||| ||||||    
T  22618946 gtgaagattgaagaaagaggaaaatgaggttgagtatgacttaaaagagaaagaaaaacctctggtgatgcaaataaattttg 22619028  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 6880962 - 6881026
Alignment:
Q  127 aagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaac 191  Q
    ||||| |||||||| ||||||||   ||||||| |||||||||||||| || | |||||||||||    
T  6880962 aagtgtgtgaagatcgaagaaagagaaagaagaagttgagtaggagatgaacgagaaagaaaaac 6881026  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 32205302 - 32205236
Alignment:
Q  125 acaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaac 191  Q
    |||||| ||||||||| ||||||||  |||||||| |||||||||| |||||||| |||||||||||    
T  32205302 acaagtaggtgaagatcgaagaaagatgaagaagaagttgagtaggggataaaagagaaagaaaaac 32205236  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 47543500 - 47543427
Alignment:
Q  117 gaaccgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaac 191  Q
    |||||||||||||||||  | |||| |||||||| |||||||||||||||||||||||| ||| | |||||||||    
T  47543500 gaaccgagacaagtgggcta-gattaaagaaaggggaagaagaggttgagtaggagatagaagagtaagaaaaac 47543427  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 19352368 - 19352215
Alignment:
Q  118 aaccgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaacttcaggtggggcaaatacattttgca 217  Q
    |||||||||||||| || || || ||||||||   | ||||| ||||||||||||||||||| ||||| ||||  || | | ||| ||||| |||||||     
T  19352368 aaccgagacaagtgagtaaatatcgaagaaag---aggaagatgttgagtaggagataaaagggaaaggaaaatatctgctagggaaaataaattttgct 19352272  T
Q  218 agaaaaccttttttgagcctttgagaaagagaacgtctcttgcaaaataacattgata 275  Q
     ||||| ||  || ||   ||  |||||||||| ||||||||||||||||||||||||    
T  19352271 ggaaaatctaatt-gaaaattgaagaaagagaatgtctcttgcaaaataacattgata 19352215  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 10682809 - 10682757
Alignment:
Q  127 aagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaag 179  Q
    |||| ||||||||| ||||||||  ||| ||||||||||||| ||||||||||    
T  10682809 aagtaggtgaagatcgaagaaagaggaataagaggttgagtatgagataaaag 10682757  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 26351765 - 26351872
Alignment:
Q  119 accgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaacttcaggtggggcaaatacattttgcaa 218  Q
    ||||||| |||||| || ||||  |||||||  ||| |||||||| |||| |||||||||| ||||||||||| || | |||  |||||| ||||||||     
T  26351765 accgagagaagtggttgtagatcaaagaaagatgaataagaggtttagtacgagataaaagagaaagaaaaacctctgatggaacaaataaattttgcag 26351864  T
Q  219 gaaaacct 226  Q
    ||||||||    
T  26351865 gaaaacct 26351872  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 41488355 - 41488292
Alignment:
Q  123 agacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaaga 186  Q
    ||||||||| ||||||||||||||||   |||||||||||||||| || |||||||| ||||||    
T  41488355 agacaagtgagtgaagattgaagaaaaatgaagaagaggttgagttggggataaaagagaaaga 41488292  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 36270124 - 36270050
Alignment:
Q  116 cgaaccgagacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaagaaaaa 190  Q
    ||||||||||||| ||||| || || ||| ||||  ||||||||  |||||||||||||||||| ||||||||||    
T  36270124 cgaaccgagacaaatgggtaaaaatcgaaaaaagatgaagaagaatttgagtaggagataaaagagaaagaaaaa 36270050  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 41490056 - 41489993
Alignment:
Q  123 agacaagtgggtgaagattgaagaaaggcgaagaagaggttgagtaggagataaaagtgaaaga 186  Q
    ||||||||| |||| |||||||||||   ||| |||||||||||| ||||||||||| ||||||    
T  41490056 agacaagtgagtgatgattgaagaaaaatgaaaaagaggttgagttggagataaaagagaaaga 41489993  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 3069975 - 3069931
Alignment:
Q  134 tgaagattgaagaaaggcgaagaagaggttgagtaggagataaaa 178  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||    
T  3069975 tgaagattgaagaaagaggaagaagaggttgagcaggagataaaa 3069931  T

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