View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_78 (Length: 274)
Name: NF13777_low_78
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 450518 - 450740
Alignment:
| Q |
1 |
acttatagaatatatagaaatattaaaatgatcttatattttgattatgagtttttctaagtaatatcttcttgtatacaattaacctatgacacactac |
100 |
Q |
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| T |
450518 |
acttatagaatatatagaaatattaaaatgatcttatattttgattatgagtatttctaagtaatatcttcttgtatacaattagcctatgacacactac |
450617 |
T |
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| Q |
101 |
ctataagtaagggattgacaactgcagtctgcagcatgagatttaattgaaagactatagcctaggtcttcgacatagttcactcattagaatttagaag |
200 |
Q |
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| T |
450618 |
ctataagtaagggattgacaactgcagtctgcagcatgagatttaattgaaagactgtagcctaggtcttcgacatagttcactcattagaatttagaag |
450717 |
T |
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| Q |
201 |
aggtttactatcaaattggtttt |
223 |
Q |
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| T |
450718 |
aggtttactatcaaattggtttt |
450740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 9448022 - 9447971
Alignment:
| Q |
14 |
atagaaatattaaaatgatcttatattttgattatgagtttttctaagtaat |
65 |
Q |
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| T |
9448022 |
atagaaatattgaaatgatcttatactttgaccatgagtttttctaactaat |
9447971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 9394955 - 9394903
Alignment:
| Q |
14 |
atagaaatattaaaatgatcttatattttgattatgagtttttctaagtaata |
66 |
Q |
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| T |
9394955 |
atagaaatattgaaatgttcttatatttttattatgatttttcctaactaata |
9394903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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