View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_low_79 (Length: 273)
Name: NF13777_low_79
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_79 |
 | |
|
| [»] scaffold0354 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0354 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 459 - 713
Alignment:
| Q |
1 |
tcaatgaccggctcggtgtcactaatctgttcttgaaataagtcaacaaaataatttcgagcaacatcacacaattgattttcatcagtaatccggttgt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
459 |
tcaatgactggctcggtgtcactaatctgttcttgaaataagtcaacaaaataatttcgagcaacatcacacaattgattttcatcagtaatccggttgt |
558 |
T |
|
| Q |
101 |
tatctagatccaacaacgaatgaattttgttaatttttcgtcttgaagaagccgcaacatggaagaacttagtattaaggtctccatcccgtaaccagtg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
559 |
tatctggatccaacaacgaatgaattttgttaacttttcgtcttgaagaagccgcagcatggaagaacttagtattaaggtctccatcccgtaaccagtg |
658 |
T |
|
| Q |
201 |
agtcttcgctctttgacgccaaaaagcatcctcttgaattaacagctgagtcata |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
659 |
agtcttcgctctttgacgccaaaaagcatcctcttgaactaacagctgagtcata |
713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 26384122 - 26384376
Alignment:
| Q |
1 |
tcaatgaccggctcggtgtcactaatctgttcttgaaataagtcaacaaaataatttcgagcaacatcacacaattgattttcatcagtaatccggttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26384122 |
tcaatgaccggctcggtgtcactaatctgttcctgaaacaagtcaacaaaataatttcgagcaacatcacacaattgattttcatcagtaatccggttgt |
26384221 |
T |
|
| Q |
101 |
tatctagatccaacaacgaatgaattttgttaatttttcgtcttgaagaagccgcaacatggaagaacttagtattaaggtctccatcccgtaaccagtg |
200 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26384222 |
tatctggatccaataacgaatgaattttgttaatttttcgtcttgaagaagccgcagcatggaagaacttcgtattaaggtctccatcccgtaaccagtg |
26384321 |
T |
|
| Q |
201 |
agtcttcgctctttgacgccaaaaagcatcctcttgaattaacagctgagtcata |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26384322 |
agtcttcgctctttgacgccaaaaagcatcctcttgaattaacagctgagtcata |
26384376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 19112545 - 19112799
Alignment:
| Q |
1 |
tcaatgaccggctcggtgtcactaatctgttcttgaaataagtcaacaaaataatttcgagcaacatcacacaattgattttcatcagtaatccggttgt |
100 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19112545 |
tcaatgaccggctcgatgtcactaatatgttcttgaaacaagtcaacaaaataatttcgagcaacatcacacaattgattttcatcagtaatccggttgt |
19112644 |
T |
|
| Q |
101 |
tatctagatccaacaacgaatgaattttgttaatttttcgtcttgaagaagccgcaacatggaagaacttagtattaaggtctccatcccgtaaccagtg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19112645 |
tatctggatccaacaacgaatgaattttgttaaattttcgtcttgaagaagccgcagcatggaagaacttagtattaaggtctccatcccgtaaccagtg |
19112744 |
T |
|
| Q |
201 |
agtcttcgctctttgacgccaaaaagcatcctcttgaattaacagctgagtcata |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19112745 |
agtcttcgctctttgacgccaaaaagcatcctcttgaaataacagctgagtcata |
19112799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 32094302 - 32094193
Alignment:
| Q |
135 |
ttttcgtcttgaagaagccgcaacatggaagaacttagtattaaggtctccatcccgtaaccagtgagtcttcgctctttgacgccaaaaagcatcctct |
234 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||| ||||| || || || ||||| | |||||| || || ||||| || | |||||||||||| ||| |
|
|
| T |
32094302 |
ttttcttcttgatgacgccgcaacatggaagaacttggtattgagatcaccgtcccgaagccagtgggtttttgctctctgtctccaaaaagcatcttct |
32094203 |
T |
|
| Q |
235 |
tgaattaaca |
244 |
Q |
| |
|
|||||||||| |
|
|
| T |
32094202 |
tgaattaaca |
32094193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 33347260 - 33347006
Alignment:
| Q |
1 |
tcaatgaccggctcggtgtcactaatctgttcttgaaataagtcaacaaaataatttcgagcaacatcacacaattgattttcatcagtaatccggttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33347260 |
tcaatgaccggctcggtgtcactaatttgttcttgaaacaagtcaacaaaataatttcgagcaacatcacacaattgattttcatcagtaatcttgttgt |
33347161 |
T |
|
| Q |
101 |
tatctagatccaacaacgaatgaattttgttaatttttcgtcttgaagaagccgcaacatggaagaacttagtattaaggtctccatcccgtaaccagtg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33347160 |
tatctgtatccaacaacgaatgaattttgttaatttttcgtcttgaagaagccgcagcatggaagaacttagtattaaggtctccatcccgtaaccattg |
33347061 |
T |
|
| Q |
201 |
agtcttcgctctttgacgccaaaaagcatcctcttgaattaacagctgagtcata |
255 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33347060 |
agtctttgctctttgacgccaaaaagcatcctcttgaattaacagctgagtcata |
33347006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 23267200 - 23267308
Alignment:
| Q |
136 |
tttcgtcttgaagaagccgcaacatggaagaacttagtattaaggtctccatcccgtaaccagtgagtcttcgctctttgacgccaaaaagcatcctctt |
235 |
Q |
| |
|
|||| ||||||||| ||||||||||| || ||||| || |||||||| |||| ||| ||||| ||||| || |||||||| | ||| || ||||| || | |
|
|
| T |
23267200 |
tttcttcttgaagatgccgcaacatgaaataacttggtgttaaggtcgccattccgcaaccaatgagttttagctctttgtcaccagaaggcatcttcct |
23267299 |
T |
|
| Q |
236 |
gaattaaca |
244 |
Q |
| |
|
| ||||||| |
|
|
| T |
23267300 |
ggattaaca |
23267308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University