View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_8 (Length: 570)
Name: NF13777_low_8
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_8 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 11 - 552
Target Start/End: Original strand, 90935 - 91476
Alignment:
| Q |
11 |
cacagacccaaatgatccaatgattgagttcatgtcaagagagtgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagag |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
90935 |
cacagacccaaatgatccaatgattgagttcatgtcaagagagtgccaaagagctcaaaaagcatctgctataattttgaacacatttgatgctttagag |
91034 |
T |
|
| Q |
111 |
catgatgttttggaagcattctcttcaatttttcctcctatcttttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaact |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
91035 |
catgatgttttggaagcattctcttcaatttttcctcctatctattccattggccccttaaatttactcttgaaagatgtgaccaatgaagaattgaact |
91134 |
T |
|
| Q |
211 |
caatagggtccaacctttggaaagaagattcaaagtgtttgaaatggctaaacaacaaagaaccaaacactgttgtttatgtcaattttggtagcgtcac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
91135 |
caatagggtccaacctttggaaagaagattcaaagtgtttgaaatggctaaacaacaaagaaccaaacactgttgtttatgtcaattttggtagcgtcac |
91234 |
T |
|
| Q |
311 |
tgttatgacaaaagaacaaatgattgagtttgcttgggggttaagtaacagtaaaaaaccgtttttgtgggtcataagaccggatcttgtatccggtgaa |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
91235 |
tgttatgacaaaagaacaaatgattgagtttgcttgggggttaagtaacagtaaaaaaccgtttttgtgggtcataaggccggatcttgtagccggtgaa |
91334 |
T |
|
| Q |
411 |
aatgctgttctacctctagagtttttggaagagacgaaagatagaggattgttgtcaagttggtgtccacaagaggaagtgttggctcattccgctatag |
510 |
Q |
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| T |
91335 |
aatgctgttctacctctagagtttttggaagagacgaaagatagaggattgttgtcaagttggtgtctacaaggggaagtgttggctcattccgctatag |
91434 |
T |
|
| Q |
511 |
gaggattcttgacacacagtggttggaattcgacgttggaga |
552 |
Q |
| |
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| T |
91435 |
gaggattcttgacacatagtggttggaattcgacgttggaga |
91476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 54 - 550
Target Start/End: Complemental strand, 26672664 - 26672168
Alignment:
| Q |
54 |
tgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatttttcctcctatct |
153 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| || |||||||| ||| || || ||||||||||||||||||||||| ||||| |||||| | | |
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| T |
26672664 |
tgccaaagagctcaaaaagcatctgcaataattttcaacacatttgacaatttggaacacgatgttttggaagcattctcttccattttacctcctgttt |
26672565 |
T |
|
| Q |
154 |
tttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacctttggaaagaagattcaaagtgtttgaa |
253 |
Q |
| |
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||||||||||||||| |||||||| | ||| | ||||| ||| | |||||| | ||||| ||||||||||| ||||| ||||| || |||||||| | |
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| T |
26672564 |
attccattggtcccttgcatttactcataaaagatgtgacaaataaggaattggattcaattgggtccaacctatggaaggaagagccagagtgtttgga |
26672465 |
T |
|
| Q |
254 |
atggctaaacaacaaagaaccaaacactgttgtttatgtcaattttggtagcgtcactgttatgacaaaagaacaaatgattgagtttgcttgggggtta |
353 |
Q |
| |
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||||||||| | |||||||| || | ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
26672464 |
atggctaaatagtaaagaacccaatagtgttgtttatgtcaattttggaagtatcactgttatgacaagtgaacaaatgattgagtttgcttggggacta |
26672365 |
T |
|
| Q |
354 |
agtaacagtaaaaaaccgtttttgtgggtcataagaccggatcttgtatccggtgaaaatgctgttctacctctagagtttttggaagagacgaaagata |
453 |
Q |
| |
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||||| ||||||| || ||||||||||||||||| || ||||||||| | ||||||||||||||| | ||||||||||||||||||||||| ||| ||| |
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| T |
26672364 |
agtaatagtaaaatgccctttttgtgggtcataaggccagatcttgtagctggtgaaaatgctgttttgcctctagagtttttggaagagaccaaaaata |
26672265 |
T |
|
| Q |
454 |
gaggattgttgtcaagttggtgtccacaagaggaagtgttggctcattccgctataggaggattcttgacacacagtggttggaattcgacgttgga |
550 |
Q |
| |
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|||| || || |||||||||||||||||||||||||| |||| ||||| | || ||||| || |||||||| | |||||||||||| |||||||| |
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| T |
26672264 |
gaggtttattatcaagttggtgtccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttgga |
26672168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 54 - 550
Target Start/End: Complemental strand, 26944262 - 26943766
Alignment:
| Q |
54 |
tgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatttttcctcctatct |
153 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || |||||||| ||| || || ||||||||||||||||||||||| ||||| |||||| | | |
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| T |
26944262 |
tgccaaagagctcaaaaagcatctgcaataattttcaacacatttgacaatttggaacacgatgttttggaagcattctcttccattttacctcctgttt |
26944163 |
T |
|
| Q |
154 |
tttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacctttggaaagaagattcaaagtgtttgaa |
253 |
Q |
| |
|
||||||||||||||| |||||||| | ||| | ||||| ||| | |||||| | ||||| ||||||||||| ||||| ||||| || |||||||| | |
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|
| T |
26944162 |
attccattggtcccttgcatttactcataaaagatgtgacaaataaggaattggattcaattgggtccaacctatggaaggaagagccagagtgtttgga |
26944063 |
T |
|
| Q |
254 |
atggctaaacaacaaagaaccaaacactgttgtttatgtcaattttggtagcgtcactgttatgacaaaagaacaaatgattgagtttgcttgggggtta |
353 |
Q |
| |
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| T |
26944062 |
atggctaaatagtaaagaacccaatagtgttgtttatgtcaattttggaagtatcactgttatgacaagtgaacaaatgattgagtttgcttggggacta |
26943963 |
T |
|
| Q |
354 |
agtaacagtaaaaaaccgtttttgtgggtcataagaccggatcttgtatccggtgaaaatgctgttctacctctagagtttttggaagagacgaaagata |
453 |
Q |
| |
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||||| ||||||| || ||||||||||||||||| || ||||||||| | ||||||||||||||| | ||||||||||||||||||||||| ||| ||| |
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| T |
26943962 |
agtaatagtaaaatgccctttttgtgggtcataaggccagatcttgtagctggtgaaaatgctgttttgcctctagagtttttggaagagaccaaaaata |
26943863 |
T |
|
| Q |
454 |
gaggattgttgtcaagttggtgtccacaagaggaagtgttggctcattccgctataggaggattcttgacacacagtggttggaattcgacgttgga |
550 |
Q |
| |
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|||| || || |||||||||||||||||||||||||| |||| ||||| | || ||||| || |||||||| | |||||||||||| |||||||| |
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|
| T |
26943862 |
gaggtttattatcaagttggtgtccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttgga |
26943766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 57 - 547
Target Start/End: Complemental strand, 26901953 - 26901457
Alignment:
| Q |
57 |
caaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatt------tttcctccta |
150 |
Q |
| |
|
|||||||||| |||||| || || |||||||| || ||||||||||| ||||| || | ||||| ||||||||||| || ||| || ||||| |
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| T |
26901953 |
caaagagctctaaaagcttcagcaataattttaaacacatttgatgcattagaacacaacgttttagaagcattctcatccattgataatttacctccag |
26901854 |
T |
|
| Q |
151 |
tcttttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacctttggaaagaagattcaaagtgttt |
250 |
Q |
| |
|
| | ||| |||||||| ||||||| ||||| ||||| ||||| |||||||||||||||| || || |||||||| |||||||| || || | ||||| |
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|
| T |
26901853 |
tttattcaattggtccaataaattttctcttaaaaaatgtgactgatgaagaattgaactctattggatccaacctatggaaagatgagacagattgttt |
26901754 |
T |
|
| Q |
251 |
gaaatggctaaacaacaaagaaccaaacactgttgtttatgtcaattttggtagcgtcactgttatgacaaaagaacaaatgattgagtttgcttggggg |
350 |
Q |
| |
|
|||||||| | ||||||||| || | ||||||||||||||||||||| || |||||||||||||||| || ||| | |||| ||||| ||||| |
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|
| T |
26901753 |
agaatggctagcaagcaaagaacctaatagtgttgtttatgtcaattttggaagtatcactgttatgacaaatgatcaattagttgaatttgcatgggga |
26901654 |
T |
|
| Q |
351 |
ttaagtaacagtaaaaaaccgtttttgtgggtcataagaccggatcttgtatccggtgaaaatgctgttctacctctagagtttttggaagagacgaaag |
450 |
Q |
| |
|
| ||| ||||||||| | ||||||||||| |||||||| |||||||| ||| ||||||||||| |||||| |||||||||||||||||| ||| |
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|
| T |
26901653 |
cttgctaatagtaaaaaaacatttttgtgggtaataagaccagatcttgtgagtggtaaaaatgctgttttacctcaagagtttttggaagagaccaaaa |
26901554 |
T |
|
| Q |
451 |
atagaggattgttgtcaagttggtgtccacaagaggaagtgttggctcattccgctataggaggattcttgacacacagtggttggaattcgacgtt |
547 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||| || | |||||| | || ||||| || |||||||| |||||||||||||| ||||| |
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|
| T |
26901553 |
atagaggtttattatcaagttggtgtccacaagaggaagttttaggtcattcatcaattggagggtttttgacacatagtggttggaattcaacgtt |
26901457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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