View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_80 (Length: 271)

Name: NF13777_low_80
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_80
NF13777_low_80
[»] chr2 (3 HSPs)
chr2 (62-261)||(17280726-17280924)
chr2 (5-50)||(17280940-17280985)
chr2 (1-42)||(21482519-21482560)
[»] chr7 (3 HSPs)
chr7 (7-42)||(24099235-24099270)
chr7 (1-35)||(34000282-34000316)
chr7 (1-52)||(26973773-26973825)
[»] chr4 (4 HSPs)
chr4 (1-51)||(34595926-34595977)
chr4 (1-52)||(1657019-1657071)
chr4 (3-35)||(14202486-14202518)
chr4 (1-52)||(29568606-29568658)
[»] chr3 (2 HSPs)
chr3 (4-42)||(7859492-7859530)
chr3 (1-35)||(53633624-53633658)
[»] chr8 (1 HSPs)
chr8 (7-52)||(32192920-32192965)
[»] chr6 (1 HSPs)
chr6 (2-35)||(10018420-10018453)
[»] chr5 (3 HSPs)
chr5 (1-42)||(31198729-31198770)
chr5 (5-42)||(42659601-42659638)
chr5 (1-41)||(22745909-22745949)
[»] chr1 (1 HSPs)
chr1 (1-49)||(30798740-30798788)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 62 - 261
Target Start/End: Complemental strand, 17280924 - 17280726
Alignment:
Q  62 tgaatcaatagtgggatg-ttttaaattcactagattattgtcccttctcttatatatatttcatttaggatggggctggtttaaaaatttatttagtga 160  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17280924 tgaatcaatagtgggatggttttaaattcactagattattgtctcttctcttatatatatttcatttaggatggggctggtttaaaaatttatttagtga 17280825  T
Q  161 gataacataatagttatgttttcacacaagaaaatagtttaagggaaagatgtagtgtcaaaatctttcaataatacaagtcttttaacctttgatactc 260  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  17280824 gataacataatagttttgttttcacacaagaaaatagtttaaggtaaagatgtagtgtcaaaatctttcaataatac--gtcttttaacctttgatactc 17280727  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 17280985 - 17280940
Alignment:
Q  5 ataatgcataatatatgtaaggtgcggggtttgaacccagacacca 50  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||    
T  17280985 ataatgtataatatatgcaaggtgcggggtttgaacccagaaacca 17280940  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21482560 - 21482519
Alignment:
Q  1 aaggataatgcataatatatgtaaggtgcggggtttgaaccc 42  Q
    |||||||||| |||||||||| ||||| ||||||||||||||    
T  21482560 aaggataatgtataatatatgcaaggtccggggtttgaaccc 21482519  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 24099270 - 24099235
Alignment:
Q  7 aatgcataatatatgtaaggtgcggggtttgaaccc 42  Q
    ||||||||||||||||||||| ||||||||||||||    
T  24099270 aatgcataatatatgtaaggttcggggtttgaaccc 24099235  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34000282 - 34000316
Alignment:
Q  1 aaggataatgcataatatatgtaaggtgcggggtt 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  34000282 aaggataatgcataatatatgtaaggttcggggtt 34000316  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26973825 - 26973773
Alignment:
Q  1 aaggataatgcataatatatgtaaggtgcggggtttgaa-cccagacaccaca 52  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||| |||||||||    
T  26973825 aaggttaatgcataatatatgtaaggtccggcgtttgaatcccggacaccaca 26973773  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34595977 - 34595926
Alignment:
Q  1 aaggataatgcataatatatgtaaggtgcggggtttgaa-cccagacaccac 51  Q
    ||||| |||||||||||||||||| || ||||||||||| ||||||||||||    
T  34595977 aaggacaatgcataatatatgtaaagttcggggtttgaaccccagacaccac 34595926  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1657071 - 1657019
Alignment:
Q  1 aaggataatgcataatatatgtaaggtgcggggtttgaaccc-agacaccaca 52  Q
    ||||| |||||||||||||||||||||  |||||| |||||| ||||||||||    
T  1657071 aaggacaatgcataatatatgtaaggtttggggttcgaacccaagacaccaca 1657019  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 14202518 - 14202486
Alignment:
Q  3 ggataatgcataatatatgtaaggtgcggggtt 35  Q
    ||||||||||||||||||||||||| |||||||    
T  14202518 ggataatgcataatatatgtaaggtccggggtt 14202486  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 29568606 - 29568658
Alignment:
Q  1 aaggataatgcataatatatgtaaggtgcggggtttgaa-cccagacaccaca 52  Q
    ||||| ||||||||||||||||||||| || |||| ||| |||||||||||||    
T  29568606 aaggacaatgcataatatatgtaaggtccgaggttcgaaccccagacaccaca 29568658  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 7859530 - 7859492
Alignment:
Q  4 gataatgcataatatatgtaaggtgcggggtttgaaccc 42  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  7859530 gataatgcataatatatgtaaggttcggggttcgaaccc 7859492  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 53633658 - 53633624
Alignment:
Q  1 aaggataatgcataatatatgtaaggtgcggggtt 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  53633658 aaggataatgcataatatatgtaaggtccggggtt 53633624  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 32192920 - 32192965
Alignment:
Q  7 aatgcataatatatgtaaggtgcggggtttgaacccagacaccaca 52  Q
    ||||||||||||||| ||||| ||||||| |||||| |||||||||    
T  32192920 aatgcataatatatgcaaggttcggggttcgaaccccgacaccaca 32192965  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 10018420 - 10018453
Alignment:
Q  2 aggataatgcataatatatgtaaggtgcggggtt 35  Q
    |||||||||||||||||||||||||| |||||||    
T  10018420 aggataatgcataatatatgtaaggttcggggtt 10018453  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31198729 - 31198770
Alignment:
Q  1 aaggataatgcataatatatgtaaggtgcggggtttgaaccc 42  Q
    ||||||||||||||||||||| || ||| |||||||||||||    
T  31198729 aaggataatgcataatatatgcaacgtgaggggtttgaaccc 31198770  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 42659601 - 42659638
Alignment:
Q  5 ataatgcataatatatgtaaggtgcggggtttgaaccc 42  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  42659601 ataatgcataatatatgtaaggttcgggctttgaaccc 42659638  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22745909 - 22745949
Alignment:
Q  1 aaggataatgcataatatatgtaaggtgcggggtttgaacc 41  Q
    ||||||||||||||||||||||||||| || |||| |||||    
T  22745909 aaggataatgcataatatatgtaaggtacgaggttcgaacc 22745949  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30798788 - 30798740
Alignment:
Q  1 aaggataatgcataatatatgtaaggtgcggggtttgaacccagacacc 49  Q
    ||||| ||||||||||||||||||| | ||||||| ||| |||||||||    
T  30798788 aaggacaatgcataatatatgtaagatccggggttcgaatccagacacc 30798740  T

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