View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_low_81 (Length: 270)
Name: NF13777_low_81
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_81 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 3390698 - 3390935
Alignment:
| Q |
18 |
acaggagaccgtggctagcaagtaagcgcagcatacggtcaagcctatttggtaagtcggagtattgagttattggtaactttgaagcaatttcgaaagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3390698 |
acaggagaccgtggctagcaagtaagcgcagcatacggtcaagcctatttggtaagtcggagtattgagttattggtaactttgaggcaatttcgaaagc |
3390797 |
T |
|
| Q |
118 |
cgacacaaatccaacactattttcatgtgatatttccttagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccata |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3390798 |
cgacacaaatccaacactactttcatgtgatatttccttagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccata |
3390897 |
T |
|
| Q |
218 |
ttggaacctataatcatggctaagagggtaccactatc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3390898 |
ttggaacctataatcatggctaagagggtaccactatc |
3390935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 3405044 - 3405281
Alignment:
| Q |
18 |
acaggagaccgtggctagcaagtaagcgcagcatacggtcaagcctatttggtaagtcggagtattgagttattggtaactttgaagcaatttcgaaagc |
117 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3405044 |
acagaagaccgtggctagcaagcaagcgtagcatacggtccagcctatttggtaagtcggagtattgagttattggtaactttgaagcaatttcgaaaga |
3405143 |
T |
|
| Q |
118 |
cgacacaaatccaacactattttcatgtgatatttccttagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccata |
217 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3405144 |
tgacacaaatccatcactgttttcatgtgatgtttccttatcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccata |
3405243 |
T |
|
| Q |
218 |
ttggaacctataatcatggctaagagggtaccactatc |
255 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
3405244 |
ttggcacctagaatcatggctaagagggtatcactatc |
3405281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 3299567 - 3299672
Alignment:
| Q |
150 |
tttccttagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaacctataatcatggctaagagggtacc |
249 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||| | |||||||||||||||| | |
|
|
| T |
3299567 |
tttccttagcaatgatttcaaacaagttgagttcaattgcggcgttaagaactgcaggaaacaccatattggcacctagcaccatggctaagagggtatc |
3299666 |
T |
|
| Q |
250 |
actatc |
255 |
Q |
| |
|
|||||| |
|
|
| T |
3299667 |
actatc |
3299672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 3361921 - 3361990
Alignment:
| Q |
150 |
tttccttagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatatt |
219 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
3361921 |
tttccttagcaatgatatcaaataaatggagttcaattgcagcgttaagaactgcaggaaacaccatatt |
3361990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 3350544 - 3350612
Alignment:
| Q |
159 |
caatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaaccta |
227 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |||| |||||| |||||||||| ||||||||||| |
|
|
| T |
3350544 |
caatgatttcaaacaagttgagttgaattgcagcattaagaactgctggaaacaccaaattggaaccta |
3350612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 3372672 - 3372741
Alignment:
| Q |
150 |
tttccttagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatatt |
219 |
Q |
| |
|
|||| ||||| ||||| ||||| || ||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
3372672 |
tttcattagctatgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccatatt |
3372741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 23992967 - 23992914
Alignment:
| Q |
156 |
tagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaa |
209 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
23992967 |
tagcaatgatatcaaataatttgagttcaattgcagcattaagaactgcaggaa |
23992914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 20721128 - 20721206
Alignment:
| Q |
49 |
catacggtcaagcctatttggtaagtcggagtattgagttattggtaactttgaagcaatttcgaaagccgacacaaatcca |
130 |
Q |
| |
|
||||||||| || ||||||||||| ||||||| ||||||| ||||||||| ||||||||||| | ||||||| ||||||| |
|
|
| T |
20721128 |
catacggtcgagtctatttggtaaatcggagtgttgagtt---ggtaactttaaagcaatttcgtaggccgacataaatcca |
20721206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 20721214 - 20721285
Alignment:
| Q |
156 |
tagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaaccta |
227 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||| |||| || ||||||||| |||||| | ||||||| |
|
|
| T |
20721214 |
tagcaatgatatcaaataatttgagctcaattgcagcattaagaattgcaggaaaaaccatagtagaaccta |
20721285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University