View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_low_83 (Length: 269)
Name: NF13777_low_83
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_83 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 37213975 - 37213736
Alignment:
| Q |
16 |
atcagctagcagcatacaaatgaagattacctgtaacgcgttaccggatccaaccggaagctcaataggactatttggcagaaagaaagnnnnnnnnntt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37213975 |
atcagctagcagcatacaaatgaagattacctgtaacgcgttaccggatccaaccggaagctcaataggactatttggcagaaagaaagaaaaaaaaatt |
37213876 |
T |
|
| Q |
116 |
atattatgtacaataataattacattacaataagatttctggaaaagaaatgcatgcatgcagaaggaggaagaggagagagagtttaatttggtgtagt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37213875 |
atattatgtacaataataattacattacaataagatttctggaaaagaaatgcatgcatgcagaaggaggaagaggagagagagtttaatttggtgtagt |
37213776 |
T |
|
| Q |
216 |
ataatgaaggtccgttttggaagaacggggcatgttttgt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37213775 |
ataatgaaggtccgttttggaagaacggggcatgttttgt |
37213736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University