View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_84 (Length: 268)

Name: NF13777_low_84
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_84
NF13777_low_84
[»] chr5 (1 HSPs)
chr5 (162-232)||(23944276-23944346)
[»] chr1 (3 HSPs)
chr1 (201-251)||(1524267-1524317)
chr1 (161-232)||(50237384-50237455)
chr1 (152-234)||(5193871-5193953)
[»] chr8 (2 HSPs)
chr8 (165-250)||(38347732-38347817)
chr8 (158-232)||(26709529-26709603)
[»] scaffold0036 (1 HSPs)
scaffold0036 (163-248)||(68117-68202)
[»] chr6 (2 HSPs)
chr6 (159-212)||(27853794-27853847)
chr6 (171-248)||(24894642-24894719)
[»] chr3 (3 HSPs)
chr3 (152-239)||(53609112-53609199)
chr3 (162-206)||(17719203-17719247)
chr3 (162-206)||(19020432-19020476)
[»] chr2 (2 HSPs)
chr2 (159-234)||(570256-570331)
chr2 (163-244)||(40327437-40327518)
[»] chr7 (2 HSPs)
chr7 (162-211)||(1580005-1580054)
chr7 (171-248)||(23208672-23208749)
[»] chr4 (1 HSPs)
chr4 (152-196)||(46785330-46785374)


Alignment Details
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 23944276 - 23944346
Alignment:
Q  162 tctttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatgg 232  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| ||||||||||||||    
T  23944276 tctttcttccatgctcaaacaatcattagaagaaagaataatagaattcataggcttcaactccctaatgg 23944346  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 1524267 - 1524317
Alignment:
Q  201 aatagaattcacaggctccaactccctaatggcacttggtcctctgatgat 251  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1524267 aatagaattcacaggctccaactccctaatgacacttggtcctctgatgat 1524317  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 50237455 - 50237384
Alignment:
Q  161 ctctttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatgg 232  Q
    |||||| |||||||||||||| ||||||| |||||||| ||| | |||||| ||||||||||| || |||||    
T  50237455 ctcttttttccatgctcaaactatcattagaagaaagagaaacataattcataggctccaacttccaaatgg 50237384  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 5193953 - 5193871
Alignment:
Q  152 caaaatcagctctttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatggca 234  Q
    |||||| | ||||||||| ||||||||||| ||||| | ||| |||| ||||||||| || ||||| ||||| || |||||||    
T  5193953 caaaattacctctttctttcatgctcaaactatcatcagaaggaagagaaatagaatccataggcttcaacttccaaatggca 5193871  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 38347732 - 38347817
Alignment:
Q  165 ttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatggcacttggtcctctgatga 250  Q
    ||||| ||||| ||||||||||||| ||||||||| |||| |||||| || || ||||||||||||||||| ||||| ||||||||    
T  38347732 ttctttcatgcccaaaccatcattagaagaaagaataatataattcatagactacaactccctaatggcacctggtcttctgatga 38347817  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 26709603 - 26709529
Alignment:
Q  158 cagctctttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatgg 232  Q
    |||||||| ||||||| | || |||||||||   ||||||||||||| ||||||||| || ||||| ||||||||    
T  26709603 cagctcttacttccatacacataccatcattcgtagaaagaaaaataaaattcacagccttcaactacctaatgg 26709529  T

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Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 68117 - 68202
Alignment:
Q  163 ctttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatggcacttggtcctctgat 248  Q
    ||||||||||||||||||| ||||| | |||||| | ||||||||| || || || |||||||||  ||| |||||||||||||||    
T  68117 ctttcttccatgctcaaactatcatcagaagaaaaagaaatagaatccatagacttcaactcccttgtggtacttggtcctctgat 68202  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 27853847 - 27853794
Alignment:
Q  159 agctctttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattcac 212  Q
    ||||||||||| ||||||||||||||||| | |||||||| |||||||||||||    
T  27853847 agctctttctttcatgctcaaaccatcatcagaagaaagagaaatagaattcac 27853794  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 24894719 - 24894642
Alignment:
Q  171 catgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatggcacttggtcctctgat 248  Q
    ||||||||||| ||||| | |||||||| ||||||||| ||  | || || ||||||||||||| |||||| ||||||    
T  24894719 catgctcaaactatcataagaagaaagagaaatagaatccatcgacttcagctccctaatggcatttggtcttctgat 24894642  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 53609199 - 53609112
Alignment:
Q  152 caaaatcagctctttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatggcacttgg 239  Q
    ||||| ||| |||||||||||||||||| | ||||||  |||||||||||||| |||||| || || || ||||| ||||||| ||||    
T  53609199 caaaaacagttctttcttccatgctcaagctatcattcgaagaaagaaaaataaaattcatagacttcagctccccaatggcatttgg 53609112  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 17719247 - 17719203
Alignment:
Q  162 tctttcttccatgctcaaaccatcattaaaagaaagaaaaataga 206  Q
    |||||||| ||||||||||| ||||||| ||||||||| ||||||    
T  17719247 tctttctttcatgctcaaactatcattagaagaaagaagaataga 17719203  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 19020476 - 19020432
Alignment:
Q  162 tctttcttccatgctcaaaccatcattaaaagaaagaaaaataga 206  Q
    |||||||| ||||||||||| ||||||| ||||||||| ||||||    
T  19020476 tctttctttcatgctcaaactatcattagaagaaagaagaataga 19020432  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 570256 - 570331
Alignment:
Q  159 agctctttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatggca 234  Q
    ||||| ||||| ||||||||||| || |||| ||| |||| ||||||||| |||| ||| ||||||||||||||||    
T  570256 agctcattctttcatgctcaaactattattagaaggaagagaaatagaatccacaagcttcaactccctaatggca 570331  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 40327437 - 40327518
Alignment:
Q  163 ctttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatggcacttggtcctc 244  Q
    ||||||||||||| ||||| ||||| | |||||| | ||| |||||||| || |||||||||||   ||| |||||||||||    
T  40327437 ctttcttccatgcacaaactatcatcagaagaaaaagaaacagaattcatagactccaactcccatgtggtacttggtcctc 40327518  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 1580054 - 1580005
Alignment:
Q  162 tctttcttccatgctcaaaccatcattaaaagaaagaaaaatagaattca 211  Q
    |||||||||||| ||||||||||||||  |||||| || |||||||||||    
T  1580054 tctttcttccattctcaaaccatcattggaagaaacaagaatagaattca 1580005  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 23208749 - 23208672
Alignment:
Q  171 catgctcaaaccatcattaaaagaaagaaaaatagaattcacaggctccaactccctaatggcacttggtcctctgat 248  Q
    ||||||||||| ||||| |  ||||||| ||||||||||||  | || || |||||||||||||| ||||| ||||||    
T  23208749 catgctcaaactatcataaggagaaagagaaatagaattcatcgacttcagctccctaatggcacatggtcttctgat 23208672  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 46785374 - 46785330
Alignment:
Q  152 caaaatcagctctttcttccatgctcaaaccatcattaaaagaaa 196  Q
    ||||| || |||||| |||||||||||||||||||||| ||||||    
T  46785374 caaaaacaactcttttttccatgctcaaaccatcattagaagaaa 46785330  T

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