View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_89 (Length: 254)

Name: NF13777_low_89
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_89
NF13777_low_89
[»] chr1 (3 HSPs)
chr1 (1-242)||(8838323-8838565)
chr1 (154-242)||(42966502-42966591)
chr1 (12-82)||(42966603-42966673)
[»] chr8 (4 HSPs)
chr8 (4-241)||(42599196-42599434)
chr8 (10-161)||(6797371-6797522)
chr8 (3-133)||(9519947-9520077)
chr8 (192-242)||(6797524-6797574)
[»] chr3 (3 HSPs)
chr3 (101-242)||(47403284-47403426)
chr3 (10-233)||(38280974-38281198)
chr3 (111-165)||(53963263-53963317)
[»] chr2 (2 HSPs)
chr2 (1-242)||(6328162-6328404)
chr2 (7-198)||(6378547-6378739)
[»] chr6 (2 HSPs)
chr6 (79-166)||(7227587-7227674)
chr6 (32-163)||(7208577-7208706)
[»] chr5 (1 HSPs)
chr5 (177-242)||(8886238-8886303)
[»] chr4 (1 HSPs)
chr4 (89-156)||(33342905-33342972)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8838565 - 8838323
Alignment:
Q  1 cggaggggtggtgtgaacaacatactccgcggtagaagaagcaccagtcttagctaggaaatatgtacaagtgtttccttctcgaagagtgtgatcaatg 100  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||||||| |    
T  8838565 cggaggggaggtgtgaacaacatacttcgaggtagaagaagcaccagtcttagctaggaaatctgaacagttgtttccttctcgaagagtgtgatcaacg 8838466  T
Q  101 gaagctagcaagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaatata-gggttagctctttaaggatttgaacacaat 199  Q
    ||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||| |||||||||||||    
T  8838465 gaagctagccaatgaagattgaggaggtccttgatgtcttgaatcaatgtagcatacttataaaatctaggggttagctctttaagaatttgaacacaat 8838366  T
Q  200 agagagaatccgtgtagcagaaaacctcttgaaagttcatctc 242  Q
     ||||||||  ||| | || |||||||||||||||||||||||    
T  8838365 ggagagaatttgtgcaacataaaacctcttgaaagttcatctc 8838323  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 42966591 - 42966502
Alignment:
Q  154 atacttatgaaatataggg-ttagctctttaaggatttgaacacaatagagagaatccgtgtagcagaaaacctcttgaaagttcatctc 242  Q
    |||||||||||||  |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  42966591 atacttatgaaatccaggggttagctctttaaggatttgaacaaaatggagagaatccgtgtagcagaaaacctcttgaaagttcatctc 42966502  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 42966673 - 42966603
Alignment:
Q  12 tgtgaacaacatactccgcggtagaagaagcaccagtcttagctaggaaatatgtacaagtgtttccttct 82  Q
    ||||||||||||| || |  ||||||||||||||||||||||||||||||| || |||  |||||||||||    
T  42966673 tgtgaacaacataatctgaagtagaagaagcaccagtcttagctaggaaatctgcacagttgtttccttct 42966603  T

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Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 42599434 - 42599196
Alignment:
Q  4 aggggtggtgtgaacaacatactccgcggtagaagaagcaccagtcttagctaggaaatatgtacaagtgtttccttctcgaagagtgtgatcaatggaa 103  Q
    ||||| |||||||||||||||||||| |||||||||||||||  |||||| ||| ||||||| |||| ||||||||||| |||||||| || ||| ||||    
T  42599434 aggggaggtgtgaacaacatactccgaggtagaagaagcaccgatcttagttagaaaatatgcacaattgtttccttctagaagagtgcgaacaaaggaa 42599335  T
Q  104 gctagcaagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaatata-gggttagctctttaaggatttgaacacaataga 202  Q
    |||| | ||||||||||||||||||||||||| |||||||||||  |||||||||||| |||| || |||||||||||||||| ||||||||| ||  ||    
T  42599334 gctaaccagtcaagattgaggaggtccttgatatcttgaatcaacctagcatacttattaaatctaggggttagctctttaagaatttgaacataaagga 42599235  T
Q  203 gagaatccgtgtagcagaaaacctcttgaaagttcatct 241  Q
    || ||||||||||| |||||||||||| |||||||||||    
T  42599234 gaaaatccgtgtagtagaaaacctcttaaaagttcatct 42599196  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 6797371 - 6797522
Alignment:
Q  10 ggtgtgaacaacatactccgcggtagaagaagcaccagtcttagctaggaaatatgtacaagtgtttccttctcgaagagtgtgatcaatggaagctagc 109  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||||||| || |||  ||||||||| |||||||||||||||||| |||||| ||    
T  6797371 ggtgtgaacaacatactctgaagtagaagaagcaccagtcttagctaggaaatctgcacatttgtttccttttcgaagagtgtgatcaatagaagcttgc 6797470  T
Q  110 aagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttat 161  Q
     ||| |||||||||||| |||||||||| ||||||||| |||||||||||||    
T  6797471 cagttaagattgaggagatccttgatgttttgaatcaacgtagcatacttat 6797522  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 9520077 - 9519947
Alignment:
Q  3 gaggggtggtgtgaacaacatactccgcggtagaagaagcaccagtcttagctaggaaatatgtacaagtgtttccttctcgaagagtgtgatcaatgga 102  Q
    |||||| |||||||||||||||||    |||||||||| ||||| ||||||||||||||| || |||  ||||||||||| ||| |||||||||||||||    
T  9520077 gaggggaggtgtgaacaacatactataaggtagaagaaacaccaatcttagctaggaaatctgcacagttgtttccttcttgaaaagtgtgatcaatgga 9519978  T
Q  103 agctagcaagtcaagattgaggaggtccttg 133  Q
     | |||| |||||||||||||||| ||||||    
T  9519977 ggttagctagtcaagattgaggagatccttg 9519947  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 6797524 - 6797574
Alignment:
Q  192 aacacaatagagagaatccgtgtagcagaaaacctcttgaaagttcatctc 242  Q
    |||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  6797524 aacacactggagagaattcgtgtagcagaaaacctcttgaaagttcatctc 6797574  T

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Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 47403426 - 47403284
Alignment:
Q  101 gaagctagcaagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaatataggg-ttagctctttaaggatttgaacacaat 199  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  47403426 gaagctagccagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaatatagggattagttctttaaggatttgaacacaat 47403327  T
Q  200 agagagaatccgtgtagcagaaaacctcttgaaagttcatctc 242  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  47403326 agagagaatccgtgtagctgaaaacctcttgaaagttcatctc 47403284  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 38281198 - 38280974
Alignment:
Q  10 ggtgtgaacaacatactccgcggtagaagaagcaccagtcttagctaggaaatatgtacaagtgtttccttctcgaagagtgtgatcaatggaagctagc 109  Q
    ||||||| |||||||||||   ||||||||| || | |||||||  |  |||| ||||||  ||||||||||||||||||||||| | |||||||||| |    
T  38281198 ggtgtgatcaacatactccaaagtagaagaaacatctgtcttagtcaaaaaatttgtacatttgtttccttctcgaagagtgtgaccgatggaagctaac 38281099  T
Q  110 aagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaatata-gggttagctctttaaggatttgaacacaatagagagaat 208  Q
     |||||||||||| ||| ||||||| ||||||||| || |||| |||||||||| || || ||||||||||||||| ||||| |||||||| |||| |||    
T  38281098 cagtcaagattgatgagatccttgaagtcttgaattaatgtagtatacttatgatatctaggggttagctctttaaagatttaaacacaatggagaaaat 38280999  T
Q  209 ccgtgtagcagaaaacctcttgaaa 233  Q
    ||||||||||||||| ||| |||||    
T  38280998 ccgtgtagcagaaaatctcatgaaa 38280974  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 53963263 - 53963317
Alignment:
Q  111 agtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaa 165  Q
    |||||| ||||||||| ||||| |||||||||||||| ||| |||||||||||||    
T  53963263 agtcaatattgaggagatccttaatgtcttgaatcaacgtaacatacttatgaaa 53963317  T

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Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6328404 - 6328162
Alignment:
Q  1 cggaggggtggtgtgaacaacatactccgcggtagaagaagcaccagtcttagctaggaaatatgtacaagtgtttccttctcgaagagtgtgatcaatg 100  Q
    |||||| | ||||||||||||||| ||   |||||||||||||||| || || |||| |||| |  |||  |  ||||||||  ||||||||||||||||    
T  6328404 cggaggagaggtgtgaacaacataatctaaggtagaagaagcaccaatcataactagaaaatctacacagttacttccttctttaagagtgtgatcaatg 6328305  T
Q  101 gaagctagcaagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaatataggg-ttagctctttaaggatttgaacacaat 199  Q
    ||||||||  |||||| ||| ||||| ||||||   ||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  6328304 gaagctagtcagtcaaaatttaggagatccttggcatcttgaatcaacgtagcatacttgtgaaatataggggttaactctttaaggatttgaacacaat 6328205  T
Q  200 agagagaatccgtgtagcagaaaacctcttgaaagttcatctc 242  Q
     |||||||| ||| ||| |||||||||||||||||||||||||    
T  6328204 ggagagaattcgtatagtagaaaacctcttgaaagttcatctc 6328162  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 6378547 - 6378739
Alignment:
Q  7 ggtggtgtgaacaacatactccgcggtagaagaagcaccagtcttagctaggaaatatgtacaagtgtttccttctcgaagagtgtgatcaatggaagct 106  Q
    ||||||||||||||||||||| |||||||||||| ||  ||||||| |||| |||| || |||| |||||||||||||||||||  ||||||||||||||    
T  6378547 ggtggtgtgaacaacatactctgcggtagaagaaacattagtcttaactagaaaatctgcacaactgtttccttctcgaagagtaagatcaatggaagct 6378646  T
Q  107 agcaagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaatatag-ggttagctctttaaggatttgaacacaa 198  Q
    | |  ||||||||||||||  ||||| | ||||| |||||| |||| ||||| ||||||| |||   ||| ||||||||||||||||||||||    
T  6378647 aacccgtcaagattgaggaaatccttaaagtcttaaatcaacgtagtatactaatgaaatctagaatttaactctttaaggatttgaacacaa 6378739  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 7227587 - 7227674
Alignment:
Q  79 ttctcgaagagtgtgatcaatggaagctagcaagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaat 166  Q
    ||||| ||| ||||||||||||||||||||  | ||||| |||||||| || | ||||||||||||||| |||||||||| |||||||    
T  7227587 ttctccaagggtgtgatcaatggaagctagtcaatcaaggttgaggagatcatagatgtcttgaatcaacgtagcatactcatgaaat 7227674  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 7208577 - 7208706
Alignment:
Q  32 gtagaagaagcaccagtcttagctaggaaatatgtacaagtgtttccttctcgaagagtgtgatcaatggaagctagcaagtcaagattgaggaggtcct 131  Q
    ||||||||| |||||   |||||||||||||||| |||| | ||  ||||||  || ||||||||||||||| | ||  ||||||| | |||||| ||||    
T  7208577 gtagaagaatcaccaagtttagctaggaaatatgcacaactctt--cttctccgagggtgtgatcaatggaaaccagacagtcaaggtcgaggagatcct 7208674  T
Q  132 tgatgtcttgaatcaaagtagcatacttatga 163  Q
     ||||||||||||||| |||||||||| ||||    
T  7208675 agatgtcttgaatcaacgtagcatactcatga 7208706  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 8886238 - 8886303
Alignment:
Q  177 ctctttaaggatttgaacacaatagagagaatccgtgtagcagaaaacctcttgaaagttcatctc 242  Q
    ||||||||||||||||| ||||| ||| |||   ||||||||||||| ||||||||||||||||||    
T  8886238 ctctttaaggatttgaaaacaatggagggaacatgtgtagcagaaaatctcttgaaagttcatctc 8886303  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 33342905 - 33342972
Alignment:
Q  89 gtgtgatcaatggaagctagcaagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcata 156  Q
    |||||| |||||| | ||| |||||||||||||| || ||||||| ||| |||||| |||||||||||    
T  33342905 gtgtgaccaatggtaactaacaagtcaagattgaagatgtccttggtgtattgaataaaagtagcata 33342972  T

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