View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_low_9 (Length: 564)

Name: NF13777_low_9
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_low_9
NF13777_low_9
[»] chr2 (6 HSPs)
chr2 (1-254)||(34847592-34847845)
chr2 (325-554)||(34847295-34847521)
chr2 (464-530)||(752123-752189)
chr2 (390-446)||(752201-752258)
chr2 (483-523)||(17910905-17910945)
chr2 (479-531)||(39792079-39792131)
[»] chr1 (6 HSPs)
chr1 (464-515)||(34620606-34620657)
chr1 (479-515)||(7445003-7445039)
chr1 (479-530)||(36995204-36995255)
chr1 (409-446)||(34620669-34620706)
chr1 (412-445)||(34766064-34766097)
chr1 (483-527)||(41885563-41885607)
[»] chr4 (2 HSPs)
chr4 (479-515)||(53234307-53234343)
chr4 (479-513)||(26009668-26009702)
[»] chr8 (6 HSPs)
chr8 (504-535)||(41235939-41235970)
chr8 (413-443)||(8871210-8871240)
chr8 (480-513)||(14955209-14955242)
chr8 (482-531)||(32202993-32203042)
chr8 (479-515)||(37953237-37953273)
chr8 (479-515)||(41570126-41570162)
[»] chr5 (1 HSPs)
chr5 (479-530)||(41384823-41384873)
[»] chr7 (3 HSPs)
chr7 (497-530)||(16082554-16082587)
chr7 (479-516)||(29559227-29559264)
chr7 (499-535)||(26980708-26980744)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 34847845 - 34847592
Alignment:
Q  1 taatcatggaatttcaaatgagattttggacaagatgatatatgagcaaaagaaattgttctatcaaccttttgtgaacaagttatcagcagaaactgtc 100  Q
    ||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34847845 taatcatggaatttcaaatgagattctgaacaagatgatatctgagcaaaagaaattgttctatcaaccttttgtgaacaagttatctgcagaaactgtc 34847746  T
Q  101 tttaatttgtctccaaaaacatacagatgggggaatccatgtgctaccaatctaagacagctttcttggtctgaagcctttcatttttctctgacagata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34847745 tttaatttgtctccaaaaacatacagatgggggaatccatgtgctaccaatctaagacagctttcttggtctgaagcctttcattttgctctgacagata 34847646  T
Q  201 taccaaatatggaccagcacataactttgaggttggttttcttcacatcaatta 254  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34847645 taccaaatatggaccagcatataactttgaggttggttttcttcacatcaatta 34847592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 325 - 554
Target Start/End: Complemental strand, 34847521 - 34847295
Alignment:
Q  325 aaactttagcacatttacttattagaaaatactaacaagtactcttaggacatttgatgagaaacctaaaaaagaaattatgtctgggattgatacattc 424  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||| |||| || |||||||| ||||    
T  34847521 aaactttagcacatttacttattagaaaatgctaacaagtgctcttaggatatttgatgagaagcctaaaaaagaaataatgtatgagattgatatattc 34847422  T
Q  425 aacacattgaaacttaaaaaagnnnnnnnnnnnnnnnnnacataaaactaactgattatttctattttagaatccttaacaagtgccctaatgacacttg 524  Q
    ||||||||||||| | ||||||                 |||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||    
T  34847421 aacacattgaaacctgaaaaag---tattttttttttttacataaaacttattgattatttctattttagaatctttaacaagtgccctaatgacacttg 34847325  T
Q  525 ttagcatttccattacttatatactacccc 554  Q
    ||||||||||| ||||||||||||||||||    
T  34847324 ttagcatttccgttacttatatactacccc 34847295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 464 - 530
Target Start/End: Complemental strand, 752189 - 752123
Alignment:
Q  464 acataaaactaactgattatttctattttagaatccttaacaagtgccctaatgacacttgttagca 530  Q
    |||||||||||||  ||||||||||||||||||| ||||||||||||||||| |  |||||||||||    
T  752189 acataaaactaaccaattatttctattttagaattcttaacaagtgccctaagggtacttgttagca 752123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 752258 - 752201
Alignment:
Q  390 ctaaaaaagaaattatgtct-gggattgatacattcaacacattgaaacttaaaaaag 446  Q
    ||||| |||||||| ||||| ||||||||| |||||||||||||||||||| ||||||    
T  752258 ctaaagaagaaattttgtcttgggattgatgcattcaacacattgaaacttgaaaaag 752201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 523
Target Start/End: Complemental strand, 17910945 - 17910905
Alignment:
Q  483 tttctattttagaatccttaacaagtgccctaatgacactt 523  Q
    |||||||||||||||| ||||||||| | ||||||||||||    
T  17910945 tttctattttagaatctttaacaagttctctaatgacactt 17910905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 39792079 - 39792131
Alignment:
Q  479 attatttctattttagaatccttaacaagtgccctaatgacacttgttagcat 531  Q
    ||||||||| |||| |||| ||||||||||| ||||| |||| ||||||||||    
T  39792079 attatttctttttttgaattcttaacaagtgtcctaaagacatttgttagcat 39792131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 515
Target Start/End: Complemental strand, 34620657 - 34620606
Alignment:
Q  464 acataaaactaactgattatttctattttagaatccttaacaagtgccctaa 515  Q
    |||||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  34620657 acataaaacttaccaattatttctattttagaatccttaacaagtgccctaa 34620606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 7445003 - 7445039
Alignment:
Q  479 attatttctattttagaatccttaacaagtgccctaa 515  Q
    |||||||||||||||||||| ||||||||||||||||    
T  7445003 attatttctattttagaatctttaacaagtgccctaa 7445039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 530
Target Start/End: Complemental strand, 36995255 - 36995204
Alignment:
Q  479 attatttctattttagaatccttaacaagtgccctaatgacacttgttagca 530  Q
    |||||||| ||||| | |||||||||||||||||||| | ||||||||||||    
T  36995255 attatttccatttttgtatccttaacaagtgccctaagggcacttgttagca 36995204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 446
Target Start/End: Complemental strand, 34620706 - 34620669
Alignment:
Q  409 tgggattgatacattcaacacattgaaacttaaaaaag 446  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  34620706 tgggattgatgcattcaacacattgaaacttgaaaaag 34620669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 34766097 - 34766064
Alignment:
Q  412 gattgatacattcaacacattgaaacttaaaaaa 445  Q
    |||||||| |||||||||||||||||||||||||    
T  34766097 gattgatatattcaacacattgaaacttaaaaaa 34766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 527
Target Start/End: Original strand, 41885563 - 41885607
Alignment:
Q  483 tttctattttagaatccttaacaagtgccctaatgacacttgtta 527  Q
    |||||||| | |||||||||||||||||||||| |||||| ||||    
T  41885563 tttctattcttgaatccttaacaagtgccctaaggacactcgtta 41885607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 53234307 - 53234343
Alignment:
Q  479 attatttctattttagaatccttaacaagtgccctaa 515  Q
    |||||||||||||||||||||||||||||||| ||||    
T  53234307 attatttctattttagaatccttaacaagtgcgctaa 53234343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 513
Target Start/End: Complemental strand, 26009702 - 26009668
Alignment:
Q  479 attatttctattttagaatccttaacaagtgccct 513  Q
    |||||||||||||||||||||||||||| ||||||    
T  26009702 attatttctattttagaatccttaacaaatgccct 26009668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 535
Target Start/End: Original strand, 41235939 - 41235970
Alignment:
Q  504 caagtgccctaatgacacttgttagcatttcc 535  Q
    ||||||||||||||||||||||||||||||||    
T  41235939 caagtgccctaatgacacttgttagcatttcc 41235970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 443
Target Start/End: Original strand, 8871210 - 8871240
Alignment:
Q  413 attgatacattcaacacattgaaacttaaaa 443  Q
    |||||||||||||||||||||||||||||||    
T  8871210 attgatacattcaacacattgaaacttaaaa 8871240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 513
Target Start/End: Complemental strand, 14955242 - 14955209
Alignment:
Q  480 ttatttctattttagaatccttaacaagtgccct 513  Q
    ||||||||||||| ||||||||||||||||||||    
T  14955242 ttatttctatttttgaatccttaacaagtgccct 14955209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 531
Target Start/End: Complemental strand, 32203042 - 32202993
Alignment:
Q  482 atttctattttagaatccttaacaagtgccctaatgacacttgttagcat 531  Q
    ||||||| ||| |||||||||||||||||||||| | |||||| ||||||    
T  32203042 atttctaattttgaatccttaacaagtgccctaagggcacttgctagcat 32202993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Complemental strand, 37953273 - 37953237
Alignment:
Q  479 attatttctattttagaatccttaacaagtgccctaa 515  Q
    |||||||||||||| |||||||||||||||| |||||    
T  37953273 attatttctatttttgaatccttaacaagtgtcctaa 37953237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 41570126 - 41570162
Alignment:
Q  479 attatttctattttagaatccttaacaagtgccctaa 515  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  41570126 attatttctattttggaaaccttaacaagtgccctaa 41570162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 530
Target Start/End: Original strand, 41384823 - 41384873
Alignment:
Q  479 attatttctattttagaatccttaacaagtgccctaatgacacttgttagca 530  Q
    |||||||||||||| ||||||||||||| || ||||| ||||||||||||||    
T  41384823 attatttctatttttgaatccttaacaaatgtcctaa-gacacttgttagca 41384873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 530
Target Start/End: Original strand, 16082554 - 16082587
Alignment:
Q  497 tccttaacaagtgccctaatgacacttgttagca 530  Q
    ||||||||||||||||| ||||||||||||||||    
T  16082554 tccttaacaagtgcccttatgacacttgttagca 16082587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 516
Target Start/End: Original strand, 29559227 - 29559264
Alignment:
Q  479 attatttctattttagaatccttaacaagtgccctaat 516  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  29559227 attatttatatttttgaatccttaacaagtgccctaat 29559264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 535
Target Start/End: Original strand, 26980708 - 26980744
Alignment:
Q  499 cttaacaagtgccctaatgacacttgttagcatttcc 535  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  26980708 cttaacaattgctctaatgacacttgttagcatttcc 26980744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University