View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_93 (Length: 244)
Name: NF13777_low_93
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_93 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 8577753 - 8577528
Alignment:
| Q |
16 |
cagtaaccacatggcaacacctctttagttgtaacaaactctgcaggattgtacaaccattannnnnnnc-----attccacctactatacaaaatttag |
110 |
Q |
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| T |
8577753 |
cagtaaccacatggccacacctctttagttgtaacaaactctgcaggattgtacaaccattttttttttcttttcattccacctactatacaaaatttgg |
8577654 |
T |
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| Q |
111 |
aattttcctca----attaacaatggagcttaacctagataagttgtagtataaataagtgagaagcacaaatttgagaacaataagagttttggagaga |
206 |
Q |
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| T |
8577653 |
aattttcctcatttaattaacaatggagcttaacctagatgagttgtagtataaataagtgagaagcacacatttgagaacaataagagttttggagaga |
8577554 |
T |
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| Q |
207 |
tcattccagctaccatcatattcttc |
232 |
Q |
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| T |
8577553 |
tcattccagctaccatcattttcttc |
8577528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 8597367 - 8597415
Alignment:
| Q |
16 |
cagtaaccacatggcaacacctctttagttgtaacaaactctgcaggat |
64 |
Q |
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| T |
8597367 |
cagtaaccacatggccacacctctttcgttgtaacaaactctgcaggat |
8597415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 8597414 - 8597451
Alignment:
| Q |
157 |
ataaataagtgagaagcacaaatttgagaacaataaga |
194 |
Q |
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| T |
8597414 |
ataaataagtgagaagcacacatttgagaacattaaga |
8597451 |
T |
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