View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13778_high_12 (Length: 208)
Name: NF13778_high_12
Description: NF13778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13778_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 34086295 - 34086111
Alignment:
| Q |
1 |
ggtcctgttgccaaggccagggccattatgcatcaattttctcagacaacaaacaatttaaggatttttccaatgacaaattgaaacctgctccactcga |
100 |
Q |
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| T |
34086295 |
ggtcctgttgccaaggccagggccattatgcatcaattttctcagacaacaaacaatttaaggatttttccaatgacaaattgaaacctgctccactcga |
34086196 |
T |
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| Q |
101 |
atcacaaacacatccttcttatctagtcctcaaaccaaaggagtaaaatagagattgcaagtaaaattataccctcccttcgacgata |
188 |
Q |
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| T |
34086195 |
atcacaaacacatc---cttatctagtcctcaaaccaaaggggtaaaatagagattgcaagtaaaattataccctcccttcgacgata |
34086111 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13818831 - 13818875
Alignment:
| Q |
1 |
ggtcctgttgccaaggccagggccattatgcatcaattttctcag |
45 |
Q |
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| T |
13818831 |
ggtcttgttgccaaggccagtgccattatgcatcaattttctcag |
13818875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 39077114 - 39077027
Alignment:
| Q |
65 |
tttttccaatgacaaattgaaacctgctccactcgaatcacaaacacatccttcttatctagtcctcaaaccaaaggagtaaaatagagat |
155 |
Q |
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||||| |||| ||| || |||||||||||| ||| ||||||||||||||| ||||| ||||||||||| || ||| ||| ||||||||| |
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| T |
39077114 |
ttttttcaatcacagatggaaacctgctccgctcaaatcacaaacacatc---cttatatagtcctcaaaacagaggggtagaatagagat |
39077027 |
T |
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