View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13778_high_3 (Length: 432)

Name: NF13778_high_3
Description: NF13778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13778_high_3
NF13778_high_3
[»] chr5 (2 HSPs)
chr5 (275-432)||(33116619-33116776)
chr5 (37-85)||(11040928-11040976)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 275 - 432
Target Start/End: Original strand, 33116619 - 33116776
Alignment:
Q  275 agctaatcaatagtattatatatgcagctgttaccaggtgcatgcttgatctcaaatgacatgacaaagaaccaatgtcaaaaaggacacagatcatggt 374  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33116619 agctaatcaagagtattatatatgcagctgttaccaggtgcatgcttgatctcaaatgacatgacaaagaaccaatgtcaaaaaggacacagatcatggt 33116718  T
Q  375 atacacaaggatgtcctagcaaattgggttggcttgcactgattggattggctctcta 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33116719 atacacaaggatgtcctagcaaattgggttggcttgcactgattggattggctctcta 33116776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 11040976 - 11040928
Alignment:
Q  37 catgataagaatgtatgctataatcgcttaatcaagttgtttaaccaaa 85  Q
    |||||||||||| |||||||||  |||||||| |||||||||| |||||    
T  11040976 catgataagaatttatgctataggcgcttaattaagttgtttatccaaa 11040928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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