View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13778_high_4 (Length: 427)
Name: NF13778_high_4
Description: NF13778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13778_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 38943030 - 38942708
Alignment:
| Q |
1 |
accattgctcagctgactgatataactgacgatggaacttttattgtaagtgcaactgttaatggattggttgaaggaatttagtaggaatgagagttat |
100 |
Q |
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| T |
38943030 |
accattgctcagctgactgatatacctgacgatggaacttttattgtaagtgcaactgttaatggattggttgaaggaatttagtaggaatgagagttat |
38942931 |
T |
|
| Q |
101 |
gaatatgactgtggttgggtggttgattgaattgcagggtaatttggaacgggaagtgattgtgtacaactaaagggagatgagattattgtgatagtat |
200 |
Q |
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| T |
38942930 |
gaatatgactgtggttgggtggttgattgaattgcagggtaatttggaatgggaagtgattgtgtacaactaaa-ggaggtgggattattgtggtagtat |
38942832 |
T |
|
| Q |
201 |
gaattgttgaggttgttgtgattgtctattctttttactatgaagccatttcctgtgtgtgtagattcagttgagnnnnnnnngtagaagtagattcagg |
300 |
Q |
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| T |
38942831 |
gaattgttgaggttgttgtcattgtctattctttttactctgaagccatttcctctgtgtgtagattcagttgagttttttaggtacaagtagattcagg |
38942732 |
T |
|
| Q |
301 |
aaagttttttgaaaaggaaaacag |
324 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
38942731 |
aaagctttttgaaaaggaaaacag |
38942708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 270
Target Start/End: Original strand, 13723893 - 13724013
Alignment:
| Q |
152 |
ggaagtgattgtgtacaactaaagggagatgagattattgtg--atagtatgaattgttgaggttgttgtgattgtctattctttttactatgaagccat |
249 |
Q |
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|||||||||||||| | ||||| |||||||| |||||||| || |||||| | ||||||||||| ||||| ||| |||||| | | |||||||| |
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| T |
13723893 |
ggaagtgattgtgttgagctaaaaggagatgaaattattgtagaattgtatgagctattgaggttgttaacattgtgtatgcttttttccaagaagccat |
13723992 |
T |
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| Q |
250 |
ttcctgtgtgtgtagattcag |
270 |
Q |
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| T |
13723993 |
ttcctgtgtttttagattcag |
13724013 |
T |
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