View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13778_high_5 (Length: 414)
Name: NF13778_high_5
Description: NF13778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13778_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 38942985 - 38943191
Alignment:
| Q |
10 |
caataaaagttccatcgtcaggtatatcagtcagctgagcaatggttttcttcgcacatacaattcgcaaatacacttcatcaaaagacgaccttacacg |
109 |
Q |
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| T |
38942985 |
caataaaagttccatcgtcaggtatatcagtcagctgagcaatggttttctttgca--tacaat-cgctaaaacacttcatcaaaagacgaacttacacg |
38943081 |
T |
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| Q |
110 |
gggaccaagtatgggaacagtcttggatgtctcaactccatcaaagcccacccagaaatatagcacacacgtcacaacaattgatatacaatgacattta |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||| || |
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| T |
38943082 |
gggagcaagtatgggaacagtcttggatgtctcaactccatcaaagcccacccagaaatataacacacgcgtcacaacaattgatatacagtaacatcta |
38943181 |
T |
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| Q |
210 |
catcagaaaa |
219 |
Q |
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|||||||||| |
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| T |
38943182 |
catcagaaaa |
38943191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 38943237 - 38943330
Alignment:
| Q |
225 |
acccattcttcaattgaagagcctcttgaatgtcaggattgatcaagagcctagttatattcatcacattatagacaaatgccttatctgcaac |
318 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |
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| T |
38943237 |
acccattcttcaattgaagagcctctggaatgtcaggattgatcaagagcctagttatattcatcacattctgcacaaatgccttatatgcaac |
38943330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 38943515 - 38943593
Alignment:
| Q |
317 |
acaacagatttttgcggaaaaaaggcaattgaatatgacaaaaccaagttaaacaattgagtgaaaaccgaactcactaa |
396 |
Q |
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| T |
38943515 |
acaacagatttttgcagaaaa-aggcaattgaatctgacaaaaccaagttaaacaattgagtgaaaactgaactcactaa |
38943593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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