View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13778_high_8 (Length: 253)
Name: NF13778_high_8
Description: NF13778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13778_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 1020620 - 1020849
Alignment:
| Q |
10 |
aatattcagcaacaaa-tatgcaggtatgaccctgctctaaatcttctcttaattctaaggtctaaatatgaaataatcgtagaaattgagcattgacaa |
108 |
Q |
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| T |
1020620 |
aatattcagcaacaaaatatgcaggtatgaccctgctctaaatcttctcttaattctaaggtctaaatatgaaataatcgtagaaattgagcattgacaa |
1020719 |
T |
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| Q |
109 |
caattagataaagcatgacacccttttgaatgtgtaaattacaaactataagtatgtagtagcatgttaaatatactaatataaaccaagtttattgtat |
208 |
Q |
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| T |
1020720 |
caattagataaagcatgacacccttttgaatgtgtaaattacaaactataagtatgtagtagcatgttaaatatactaatataaaccaagtttattgtat |
1020819 |
T |
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| Q |
209 |
actcaccttagtttgattcaatgcagtagc |
238 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
1020820 |
actcgccttagtttgattcaatgcagtagc |
1020849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 36661505 - 36661422
Alignment:
| Q |
24 |
aatatgcaggtatgaccctgctctaaatcttctcttaattctaaggtctaaatatgaaataatcgtagaaattgagcattgaca |
107 |
Q |
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||||||||||||| ||| |||| ||||||| |||| ||||||| ||||| || |||||| | |||| ||||||||||||||| |
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| T |
36661505 |
aatatgcaggtataaccttgcttaaaatcttgtcttcattctaatttctaactaagaaatagttgtagcaattgagcattgaca |
36661422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 158
Target Start/End: Original strand, 37709290 - 37709320
Alignment:
| Q |
128 |
acccttttgaatgtgtaaattacaaactata |
158 |
Q |
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| T |
37709290 |
acccttttgaatgtgtaaattacaaactata |
37709320 |
T |
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